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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PQNDYIERHIKQHGKRLDHEERKRKREARESHKISERAQKLTGWKGKQFAKKRYAEKVSMRKKIKAHEQSKVKRMITKHT
FVGEGFTRRPVKMERIIRPSALRQKKANVTHPELGVTVFLPILAVKKNPQSPMYTQLGVLTKGTIIEVNVSELVWGKYAQ
VTNEPDRDGCVNAVLL

The query sequence (length=176) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6elz:r 176 176 1.0000 1.0000 1.0000 2.17e-130 6em5:r, 7nac:r, 7r7a:r, 7u0h:r
2 8v87:r 214 214 1.0000 0.8224 0.8224 3.88e-123 8v84:r
3 6n8j:r 204 203 0.9886 0.8529 0.8571 3.37e-119
4 7bt6:r 230 229 1.0000 0.7652 0.7686 2.27e-118 7btb:r, 6em1:r, 6ft6:r, 8hfr:xd, 3jct:r, 6m62:r, 7oh3:r, 7ohp:r, 7ohq:r, 7ohs:r, 7oht:r, 7ohu:r, 7ohv:r, 7ohw:r, 7ohy:r, 7r7c:r, 7ug6:r, 7uoo:r, 7uqb:r, 7uqz:r, 7v08:r, 6ylg:r, 6ylh:r, 6ylx:r, 6yly:r, 7z34:r
5 7ohr:r 159 176 0.9034 1.0000 0.9034 6.08e-109
6 8v83:r 184 197 0.9091 0.8696 0.8122 1.48e-106
7 8esq:r 166 176 0.6591 0.6988 0.6591 2.32e-76 8esr:r, 8etc:r, 8etg:r, 8eti:r, 8etj:r, 8eup:r, 8euy:r, 8ev3:r
8 8i9w:CK 238 237 0.7045 0.5210 0.5232 7.35e-76 8i9t:CK, 8i9v:CK, 8i9x:CK, 8i9y:CK, 8i9z:CK, 8ia0:CK, 8pv1:CK, 8pv2:CK, 8pv3:CK, 8pv4:CK, 8pv5:CK, 8pv6:CK, 8pv7:CK, 8pv8:CK, 8pvk:CK, 8pvl:CK
9 8fl2:NF 233 232 0.6477 0.4893 0.4914 5.67e-70 8fkv:NF, 8fkw:NF, 8fl3:NF, 8fl4:NF, 8ie3:R, 8ink:J, 8ipd:J, 8ipx:J, 8ipy:J
10 8fkz:NF 175 185 0.6080 0.6114 0.5784 1.79e-69
11 8fkx:NF 209 218 0.6136 0.5167 0.4954 5.85e-65 8fkr:NF, 8fks:NF, 8fkt:NF, 8fku:NF, 8fky:NF
12 7of1:r 99 100 0.4773 0.8485 0.8400 9.53e-51
13 8ir1:J 259 113 0.4375 0.2973 0.6814 5.38e-50 8fl0:NF, 8fl6:NF, 8fl7:NF, 8fl9:NF, 8idy:v, 8ine:s, 8inf:s, 8ir3:J
14 8ir1:J 259 74 0.2159 0.1467 0.5135 4.06e-18 8fl0:NF, 8fl6:NF, 8fl7:NF, 8fl9:NF, 8idy:v, 8ine:s, 8inf:s, 8ir3:J
15 8hkx:AS8E 126 70 0.1307 0.1825 0.3286 1.43e-06 8hky:AS8E, 8hkz:AS8E, 8hl1:AS8E, 8hl2:AS8E, 8hl3:AS8E, 8hl4:AS8E, 8hl5:AS8E, 8wkp:AS8E, 8wq2:AS8E, 8wq4:AS8E
16 6skf:Ak 125 55 0.1250 0.1760 0.4000 4.36e-06 6skg:Ak, 6th6:Ak
17 5jb3:J 127 55 0.1193 0.1654 0.3818 6.29e-06 5jbh:J, 6sw9:J, 6swc:J, 6swd:J, 4v4n:BJ, 4v6u:AJ, 7zag:J, 7zah:J, 7zai:J, 7zhg:J
18 6tmf:K 126 55 0.1193 0.1667 0.3818 1.14e-05
19 5da8:M 463 47 0.0909 0.0346 0.3404 1.9
20 7awt:G 907 43 0.0795 0.0154 0.3256 2.3 7nyr:G, 7nyu:G, 7nyv:G, 7nz1:G, 7p61:G, 7p62:G, 7p63:G, 7p64:G, 7p69:G, 7p7c:G, 7p7e:G, 7p7j:G, 7p7k:G, 7p7l:G, 7p7m:G, 7z7r:G, 7z7s:G, 7z7t:G, 7z7v:G, 7z80:G, 7z83:G, 7z84:G, 7zc5:G, 7zci:G
21 3v17:A 276 39 0.0795 0.0507 0.3590 6.3 3v17:C, 3v17:B, 3v17:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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