Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5bps:B 75 74 0.9867 0.9867 1.0000 1.17e-45 5bps:C, 5bps:A, 5bps:D, 5bps:E, 5bps:K, 5bps:L, 5bps:M, 5bps:N, 5bps:O, 5bq6:A, 5bq6:B, 5bq6:C, 5bq6:E, 5bq6:K, 5bq6:L, 5bq6:M, 5bq6:O, 5bqa:A, 5bqa:B, 5bqa:D, 5bqa:E, 5bqa:K, 5bqa:L, 5bqa:M, 5bqa:N, 5bqa:O, 5bqj:B, 5bqj:C, 5bqj:A, 5bqj:D, 5bqj:E, 5bqj:K, 5bqj:L, 5bqj:M, 5bqj:O, 6cp5:O, 6cp5:P, 4f4s:B, 4f4s:C, 4f4s:A, 4f4s:D, 4f4s:E, 4f4s:K, 4f4s:L, 4f4s:M, 4f4s:N, 4f4s:O, 3u32:L, 3u32:M, 3u32:O
2 8khf:4 75 69 0.6000 0.6000 0.6522 2.10e-25 8ki3:4, 8ki3:5, 6tt7:3, 6tt7:4
3 8aph:P1 78 67 0.4267 0.4103 0.4776 2.90e-16 8apj:P1
4 3zk1:A 89 72 0.3200 0.2697 0.3333 3.15e-09 3zk1:B, 3zk1:D, 3zk1:G, 3zk1:H, 3zk1:J, 3zk1:N, 3zk1:O, 3zk1:P, 3zk1:R, 3zk1:S, 3zk1:U, 3zk2:A, 3zk2:C, 3zk2:E, 3zk2:H, 3zk2:I, 3zk2:K, 3zk2:M, 3zk2:N, 3zk2:O, 3zk2:P, 3zk2:L
5 4cbj:B 69 43 0.2000 0.2174 0.3488 6.38e-04 4cbj:C, 4cbj:F, 4cbj:J, 4cbj:L, 4cbj:M, 4cbk:F, 4cbk:G, 4cbk:J, 4cbk:L, 2x2v:D, 2x2v:F, 2x2v:G, 2x2v:H, 2x2v:J, 2x2v:M
6 2wie:A 82 58 0.2267 0.2073 0.2931 0.011 2wie:B, 2wie:C, 2wie:D, 2wie:E, 2xqs:D, 2xqt:A, 2xqt:B, 2xqt:C, 2xqt:D, 2xqt:E, 2xqu:A, 2xqu:B, 2xqu:C, 2xqu:D, 2xqu:E
7 3qr0:A 781 23 0.1067 0.0102 0.3478 2.3 3qr1:A, 3qr1:D
8 6q45:F 462 36 0.2000 0.0325 0.4167 5.4 6q45:D, 6q45:L, 6q45:N
9 1jwy:A 1039 40 0.1867 0.0135 0.3500 8.0 4ae3:A, 2aka:A, 7b19:A, 7b1a:A, 3bz7:A, 3bz8:A, 3bz9:A, 1d0x:A, 1d0y:A, 1d0z:A, 1d1a:A, 1d1b:A, 1d1c:A, 1fmw:A, 2jhr:A, 2jj9:A, 1jx2:A, 1lvk:A, 3mjx:A, 3mkd:A, 1mma:A, 1mmd:A, 1mmg:A, 1mmn:A, 1mne:A, 3mnq:A, 3myh:X, 3myk:X, 3myl:X, 4pjk:A, 1vom:A, 1w9i:A, 1w9j:A, 1w9k:A, 1w9l:A, 2x9h:A, 2xel:A, 2xo8:A, 2y8i:X, 1yv3:A, 6z2s:A, 6z7t:A, 6z7t:B, 6z7u:A
10 1fx8:A 254 53 0.1867 0.0551 0.2642 8.2

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218