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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKY
KTQKATILEASLKKLIPAWEFTIIPYYGQKHQSDITDIVSSLQLQFESNSHSKKMLKALLSEGESIWEITEKILNSFEYT
SRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEF
LRNSEPVLKRVNRTGNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSD
KRASAVARTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQSIRYPAWNGIISQEVLDYLSSYI
NRRI

The query sequence (length=404) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1p4e:B 413 415 0.9629 0.9419 0.9373 0.0 1flo:A, 1flo:D, 1flo:B, 1flo:C, 1m6x:A, 1m6x:C, 1m6x:D, 1m6x:B, 1p4e:A, 1p4e:C, 1p4e:D
2 8p0y:A 66 35 0.0347 0.2121 0.4000 4.7 8p10:L
3 7zhu:B 543 61 0.0446 0.0331 0.2951 8.5 7zhu:A, 7zhv:B, 7zhw:A, 7zhw:B, 7zhx:A, 7zhy:A, 7zhy:B, 7zhz:A, 7zhz:B
4 7ezx:e2 248 70 0.0470 0.0766 0.2714 8.9 7ezx:eR, 6kgx:e3, 6kgx:eD, 7y4l:eK, 7y4l:e1, 7y5e:eA, 7y5e:e7, 7y7a:eD, 7y7a:e5, 7y7a:eg, 7y7a:ei

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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