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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDAESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYV
TYGALDQLGIDADAVFAEVHRANLSKASGPLKPEGWRPADVRGVIERLQHA

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2yf3:C 153 138 0.9924 0.8497 0.9420 3.72e-86 5hva:A, 5hva:B, 5hva:C, 5hva:D, 5hwu:A, 5hwu:B, 5hx1:A, 5hx1:C, 5hx1:B, 5hx1:D, 5hyl:A, 5hyl:C, 5hyl:B, 5hyl:D, 5hzz:A, 5hzz:B, 5hzz:C, 5hzz:D, 5i0j:A, 5i0j:D, 5i0j:B, 5i0j:C, 5i0m:A, 5i0m:D, 5i0m:B, 5i0m:C, 2yf3:A, 2yf3:B, 2yf3:D, 2yf3:E, 2yf3:F, 2yfc:A, 2yfc:B, 2yfc:C, 2yfc:D, 2yfd:A, 2yfd:B, 2yfd:C, 2yfd:D
2 5fp1:A 701 63 0.1374 0.0257 0.2857 1.2
3 2yxh:A 114 69 0.1527 0.1754 0.2899 1.8 2yxh:B
4 6ety:A 696 30 0.1069 0.0201 0.4667 2.8 7bfz:A, 3bhx:A, 3bi0:A, 3bi1:A, 8bo8:A, 8bol:A, 8bow:A, 3bxm:A, 2c6c:A, 2c6g:A, 2c6p:A, 2cij:A, 5d29:A, 3d7d:A, 3d7f:A, 3d7g:A, 3d7h:A, 5ely:A, 6ez9:A, 5f09:A, 6f5l:A, 6fe5:A, 6h7y:A, 6h7z:A, 6hkj:A, 6hkz:A, 3iww:A, 2jbj:A, 2jbk:A, 4jyw:A, 4jz0:A, 4lqg:A, 4mcp:A, 4mcq:A, 4mcr:A, 4mcs:A, 4ngm:A, 4ngn:A, 4ngp:A, 4ngq:A, 4ngr:A, 4ngs:A, 4ngt:A, 5o5r:A, 5o5t:A, 5o5u:A, 4oc0:A, 4oc1:A, 4oc2:A, 4oc3:A, 4oc4:A, 4oc5:A, 5of0:A, 4ome:A, 2oot:A, 2or4:A, 4p44:A, 4p45:A, 4p4b:A, 4p4d:A, 4p4e:A, 4p4f:A, 4p4i:A, 4p4j:A, 2pvv:A, 2pvw:A, 3rbu:A, 6rbc:A, 6rti:A, 6s1x:A, 6sgp:A, 3sje:A, 3sjf:A, 3sjg:A, 3sjx:A, 6skh:A, 4w9y:A, 4x3r:A, 2xef:A, 2xeg:A, 2xei:A, 2xej:A, 1z8l:A, 1z8l:B, 1z8l:C, 1z8l:D
5 3tqo:A 387 50 0.1450 0.0491 0.3800 3.4
6 4df2:A 404 75 0.1832 0.0594 0.3200 9.6 4m5p:A, 4qai:A, 4qai:B, 4qai:C, 4qai:D, 4qai:E, 4qai:F, 3tjl:A, 3upw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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