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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PPPYGYRKGWIPRLLEDFGDGGAFPEIHVAQYPLDMGRKKKMSNALAIQVDSEGKIKYDAIARQGQSKDKVIYSKYTDLV
PKEVMNADDPDLQRPDEEAIKEITEKTRVALEKSVSQKVAAAMPVRAADKLAPAQYIRYTPSQQGVAFNSGAKQRVIRMV
EMQKDPMEPPRFKINKKIPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQTVHI
NENFAKLAEALYIADRKAREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERR

The query sequence (length=295) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 9fmd:R 328 295 1.0000 0.8994 1.0000 0.0 8ro2:R
2 8i0u:R 380 295 0.9763 0.7579 0.9763 0.0 8c6j:K, 8i0s:R, 8i0t:R, 8i0v:R, 8i0w:R, 6icz:R, 6id0:R, 6id1:R, 5mqf:C, 6qdv:K, 7w59:R, 7w5a:R, 7w5b:R, 5xjc:R, 5yzg:R, 6zym:C
3 6ff4:C 286 252 0.8542 0.8811 1.0000 0.0 6ff7:C
4 8ch6:Y 306 254 0.7254 0.6993 0.8425 3.00e-142 7qtt:Y
5 7aav:v 206 206 0.5831 0.8350 0.8350 2.25e-113 7abi:v
6 8ro0:R 282 270 0.6102 0.6383 0.6667 1.14e-107 8ro1:R
7 7dvq:R 241 222 0.5220 0.6390 0.6937 3.53e-84
8 3jb9:M 207 220 0.3559 0.5072 0.4773 3.56e-48
9 7dco:P 246 223 0.2169 0.2602 0.2870 6.20e-17 6exn:K, 5gm6:P, 5gmk:P, 6j6g:P, 6j6h:P, 6j6n:P, 6j6q:P, 5lj3:K, 5lj5:K, 5lqw:M, 5wsg:P, 5y88:Q, 5ylz:Q
10 5mps:K 187 201 0.2136 0.3369 0.3134 1.14e-15 7b9v:K, 5mq0:K
11 6bk8:E 186 200 0.2068 0.3280 0.3050 1.14e-15
12 2xrc:C 454 71 0.0746 0.0485 0.3099 0.54
13 7t3u:C 1575 30 0.0407 0.0076 0.4000 2.2
14 7t3u:A 2020 30 0.0407 0.0059 0.4000 2.2 7t3u:D
15 7t3p:A 2066 30 0.0407 0.0058 0.4000 2.2 7t3p:B, 7t3p:C, 7t3p:D
16 7t3q:A 2103 30 0.0407 0.0057 0.4000 2.2 7t3q:B, 7t3q:C, 7t3q:D, 7t3u:B
17 6mpx:A 673 47 0.0542 0.0238 0.3404 2.5 1t61:C, 1t61:F
18 6mpx:A 673 47 0.0542 0.0238 0.3404 2.5 1t61:C, 1t61:F
19 8vlx:A 2431 53 0.0542 0.0066 0.3019 2.7
20 6z6f:B 661 96 0.1051 0.0469 0.3229 3.5 6z6f:A, 6z6h:A, 6z6h:B, 6z6h:F, 6z6h:G, 6z6o:A, 6z6o:B, 6z6o:E, 6z6o:F, 6z6o:I, 6z6o:J, 6z6o:M, 6z6o:N, 6z6p:K, 6z6p:L
21 4xrf:A 142 57 0.0576 0.1197 0.2982 3.5
22 5sd6:A 187 30 0.0373 0.0588 0.3667 6.2 6a7c:A, 6a7e:A, 1boz:A, 2c2s:A, 2c2s:B, 2c2t:A, 2c2t:B, 6dav:A, 6dav:B, 4ddr:A, 6de4:A, 6de4:B, 2dhf:A, 2dhf:B, 1dlr:A, 1dls:A, 3eig:A, 7ese:A, 3f8y:A, 3f8z:A, 3f91:A, 3fs6:A, 4g95:A, 3ghc:A, 3ghv:A, 3ghw:A, 3gi2:A, 3gyf:A, 1hfp:A, 1hfq:A, 1hfr:A, 5hpb:A, 5hqy:A, 5hqz:A, 5hsr:A, 5hsu:A, 5ht4:A, 5ht5:A, 5hui:A, 5hvb:A, 5hve:A, 4kak:A, 4kak:B, 4kbn:A, 4kbn:B, 4kd7:A, 4kd7:B, 4keb:A, 4keb:B, 4kfj:A, 4kfj:B, 1kms:A, 1kmv:A, 3l3r:A, 4m6j:A, 4m6k:A, 4m6l:A, 1mvs:A, 1mvt:A, 3n0h:A, 3ntz:A, 3nu0:A, 3nxo:A, 3nxr:A, 3nxt:A, 3nxv:A, 3nxx:A, 3nxy:A, 3nzd:A, 3oaf:A, 1ohj:A, 1ohk:A, 1pd8:A, 1pd9:A, 4qhv:A, 4qjc:A, 1s3u:A, 1s3v:A, 1s3w:A, 3s3v:A, 3s7a:A, 5sd7:A, 5sd8:A, 5sd9:A, 5sda:A, 5sdb:A, 5sdb:B, 1u71:A, 1u72:A, 6vcj:A, 6vcj:B, 6vcj:C, 6vcj:D, 2w3a:A, 2w3a:B, 2w3b:A, 2w3b:B, 2w3m:A, 2w3m:B, 8wgn:A, 7xi7:A, 1yho:A
23 4ri5:A 284 32 0.0441 0.0458 0.4062 7.5 4qum:A, 4rh5:A, 4rh9:A, 4rhg:A, 4ri5:B, 4s0g:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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