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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PPPSIRSCGSQQYVTSYIPTGAAFPPSSVQDMISSMKSYASATDLVRTYSEIPSVEEALSTLDRAAAALNARRYRDALKL
YLEGGYAMANVAERQANPKICNLLTSKGFETLNWCARLCDWIEGRIKEKHPRPGVHKVGIPVSNWDEDWVGPFMDEEEAR
RMWYTPVYCPHPIDFSNLGYRLRCVETGRRPRLMICITMYNEGPQQLKATLKKLANNLAYLKEQMPGDEKSLTGAFAGDD
VWQNVLVCIVADGREQVHPKTLDYLEAIGLYDEDLLTINSAGIGAQCHLFEHTLQLSVNGKCLLPIQTVFALKENKASKL
DSHHWYFNAFAEQIQPEYTAVMDVGTMLTKSALYHLLFAFERNHQIGGACGQLTVDNPFENLSNWVISAQHFEYKISNIL
DKSLESCFGFISVLPGAFSAYRYEAIRGAPLDAYFQTLNIELDVLGPFIGNMYLAEDRILSFEVVARKNCNWTMHYVKDA
VARTDVPHDLVGLISQRKRWLNGAFFATLFSIWNWGRIYSESKHTFVRKMAFLVFYVYHLLYTAFGFFLPANLYLALFFI
VFQGFQQNRLEFIDTSEYSQTVLDCAVYIYNFSYLFGLLMLIIIGLGNNPKHMKLTYYFVGAVFGLMMMLSSLVGAGIFF
STPATVHSIVVSILTVGVYFIASALHGEVHHIFMTFTHYTALIPSFVNIFTIYSFCNLQDLSKGDFKDVIAKRRALEELR
REEKERVENRKKNFEAFRTNVLLTWAFSNLIFALFVVYFASSSTYMPVLYIFVASLNTCRLLGSIGHWVYIHTEGLRGRV
I

The query sequence (length=801) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7wjn:A 808 791 0.9863 0.9777 0.9987 0.0 7wjn:B, 7wjo:A, 7wjo:B, 7x05:A, 7x05:B, 7x06:A, 7x06:B
2 8k3w:B 694 636 0.2747 0.3170 0.3459 2.01e-108 8k3w:A, 8k3x:A, 8k3x:B
3 8k3p:A 660 575 0.2609 0.3167 0.3635 3.36e-108 8k3p:B, 8k3t:A, 8k3t:B
4 8k3u:A 597 533 0.2509 0.3367 0.3771 3.17e-107 8k3u:B
5 7xs6:B 729 589 0.2622 0.2881 0.3565 3.01e-106 8k3v:A, 8k3v:B, 7xs6:A, 7xs7:B, 7xs7:A
6 7stm:A 801 684 0.2759 0.2759 0.3231 2.24e-103 7stm:B, 7stn:A, 7stn:B, 7sto:B, 7sto:A
7 8snd:A 500 214 0.0662 0.1060 0.2477 0.003 8snc:A, 8sne:A, 7sp6:A, 7sp7:A, 7sp8:A, 7sp9:A, 7spa:A
8 2x5d:D 380 36 0.0175 0.0368 0.3889 1.1 2x5d:A
9 6skz:A 2638 89 0.0325 0.0099 0.2921 3.0 6sl0:A, 6sl0:B
10 2mjp:A 184 31 0.0150 0.0652 0.3871 3.9
11 6sl1:A 2652 90 0.0325 0.0098 0.2889 4.0 6sky:A, 6sky:B
12 8p5d:LG0 199 53 0.0237 0.0955 0.3585 6.1 8p60:LG0, 8p60:KG0, 7qca:LG0
13 8oin:Aa 381 87 0.0275 0.0577 0.2529 6.5 8oip:Aa, 8oiq:Aa, 8oir:Aa, 8ois:Aa, 8oit:Aa
14 8khw:A 582 62 0.0237 0.0326 0.3065 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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