Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PPPPPPPPPPPPPPPEDTVQFRIPMEMTRVDLRNYLERIYNVPVAAVRTRVQYGSNRRRDHRNIRIKKPDYKVAYVQLAL
GQPPPPP

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ce4:X 87 87 1.0000 1.0000 1.0000 4.30e-55
2 5aj4:BX 134 78 0.8046 0.5224 0.8974 2.08e-45 7qh7:U, 4v19:X
3 6gaw:BX 149 78 0.8046 0.4698 0.8974 2.26e-45 6gb2:BX, 7nqh:BX, 7nql:BX, 7nsh:BX, 7nsi:BX, 7nsj:BX, 8oin:BB, 8oiq:BB, 6ydp:BX, 6ydw:BX
4 7a5h:U 152 78 0.7471 0.4276 0.8333 6.46e-42 7a5f:U3, 7a5g:U3, 7a5i:U3, 7a5j:U, 7a5k:U3, 8any:U, 6i9r:U, 3j7y:U, 3j9m:U, 8k2a:LW, 8k2b:LW, 7l08:U, 7l20:U, 6nu2:U, 6nu3:U, 7o9k:U, 7o9m:U, 7odr:U, 7ods:U, 7odt:U, 7of0:U, 7of2:U, 7of3:U, 7of4:U, 7of5:U, 7of6:U, 7of7:U, 7og4:XU, 7oi6:U, 7oi7:U, 7oi8:U, 7oi9:U, 7oia:U, 7oib:U, 7oic:U, 7oid:U, 7oie:U, 8oir:BB, 8oit:BB, 5ool:U, 5oom:U, 7pd3:U, 8pk0:U, 7po4:U, 7qh6:U, 7qi4:U, 7qi5:U, 7qi6:U, 8qsj:U, 8qu1:U, 8qu5:U, 6vlz:U, 6vmi:U, 8xt0:LW, 8xt1:LW, 8xt2:LW, 8xt3:LW, 6zm6:U, 6zs9:XU, 6zsa:XU, 6zsb:XU, 6zsc:XU, 6zsd:XU, 6zse:XU, 6zsg:XU
5 6zm5:U 133 78 0.7471 0.4887 0.8333 7.21e-42
6 7aih:N 189 59 0.3103 0.1429 0.4576 3.33e-06 7am2:N, 7ane:N
7 6ywe:P 180 42 0.2069 0.1000 0.4286 1.77e-05 6yws:P, 6ywv:P, 6ywx:P, 6ywy:P
8 3j6b:P 207 60 0.1724 0.0725 0.2500 0.001 5mrc:P, 5mre:P, 5mrf:P
9 6xyw:At 105 51 0.1954 0.1619 0.3333 0.006
10 6hiv:AX 168 58 0.2184 0.1131 0.3276 0.039 7aoi:AX, 6hix:AX, 6yxx:AX, 6yxy:AX
11 4v8p:BR 121 58 0.1494 0.1074 0.2241 1.8 4v8p:CR, 4v8p:ER, 4v8p:GR
12 4psi:A 125 40 0.1609 0.1120 0.3500 2.1 4psi:B
13 2dw6:A 388 24 0.1149 0.0258 0.4167 3.3 2dw6:B, 2dw6:C, 2dw6:D, 2dw7:A, 2dw7:B, 2dw7:C, 2dw7:D, 2dw7:E, 2dw7:F, 2dw7:G, 2dw7:H, 2dw7:I, 2dw7:J, 2dw7:K, 2dw7:L, 2dw7:M, 2dw7:N, 2dw7:O, 2dw7:P, 1tzz:A, 1tzz:B
14 6evg:A 444 44 0.1724 0.0338 0.3409 3.4
15 8af0:A 123 27 0.1379 0.0976 0.4444 3.5 8af0:B, 9bdl:ANG, 9bdn:ANG, 9bdp:ANG, 5epz:A, 5eqo:A, 1h52:A, 1h53:A, 1hby:A, 7npm:AAA
16 6sw9:U 149 49 0.1724 0.1007 0.3061 8.3 5jb3:U, 5jbh:U, 6swc:U, 6swe:U, 4v4n:BU, 4v6u:AU, 7zag:U, 7zah:U, 7zai:U, 7zhg:U

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218