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BioLiP
>protein
PPLLTPAEVATMFRVDPKTVTRWAKAGKLTSIRTMGGHRRYREAEVRALMAG

The query sequence (length=52) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ama:Y 57 51 0.9423 0.8596 0.9608 7.75e-31 6ama:A, 6ama:B, 6ama:G, 6ama:H, 6ama:K, 6ama:L, 6ama:C, 6ama:D, 6ama:O, 6ama:P, 6amk:A, 6amk:B
2 2zhg:A 121 45 0.3462 0.1488 0.4000 0.003 2zhh:A
3 5i44:B 68 41 0.2885 0.2206 0.3659 0.055 5i44:A, 5i44:D, 5i44:E, 5i44:H, 5i44:J, 5i44:K, 5i44:G, 5i44:F, 5i44:I
4 4ylr:A 331 25 0.2500 0.0393 0.5200 0.41 4yls:A
5 8btt:B 484 39 0.2500 0.0269 0.3333 0.86
6 8odp:A 505 39 0.2500 0.0257 0.3333 1.0 8btt:A, 8odo:A, 8odo:C, 8odo:E, 8odo:G, 8odp:C, 8odp:E, 8odp:G, 7p3b:A, 7p3b:B
7 2je2:A 157 26 0.1923 0.0637 0.3846 1.1 8gar:A, 2je3:A
8 2vz4:A 100 46 0.2885 0.1500 0.3261 1.1
9 3fkq:A 354 20 0.1923 0.0282 0.5000 1.9
10 7ohw:b 259 37 0.2308 0.0463 0.3243 2.4
11 8rry:A 170 22 0.1731 0.0529 0.4091 4.9 8rry:B
12 8thm:B 462 36 0.2692 0.0303 0.3889 6.7 8thm:A, 8thm:C, 8thm:D, 8thm:F, 8thm:E
13 5ncw:A 334 43 0.2500 0.0389 0.3023 7.1 5nct:A
14 8q9v:A 543 18 0.1731 0.0166 0.5000 7.8 8q9u:A
15 2r42:A 383 58 0.2692 0.0366 0.2414 8.1 1kvk:A
16 6n2m:A 142 26 0.2115 0.0775 0.4231 8.3 6e25:A, 6n2m:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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