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BioLiP
>protein
PPKIVWNEGKRRFETEDHEAFIEYKMRNNGKVMDLVHTYVPSFKRGLGLASHLCVAAFEHASSHSISIIPSCSYVSDTFL
PRNPSWKPLIH

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1xmt:A 95 91 1.0000 0.9579 1.0000 9.61e-66 2il4:A, 2q4y:A
2 2h5m:A 102 86 0.2747 0.2451 0.2907 2.51e-05
3 4hg6:A 747 42 0.1538 0.0187 0.3333 0.13 5eiy:A, 5ej1:A, 5ejz:A, 4p00:A, 4p02:A
4 6rtp:B 484 84 0.2857 0.0537 0.3095 0.22 5jsh:B, 5jsk:B, 5jsu:B, 5jsy:B, 5jt1:B, 6ru9:B, 6ruc:B, 2wpn:B, 6z7r:B, 6z7r:D, 6z8j:B, 6z8j:D, 6z8m:B, 6z8o:B, 6z8o:D, 6z9g:B, 6z9g:D, 6z9g:F, 6z9g:H, 6z9o:B, 6za1:B, 3ze6:B, 3ze7:B, 3ze8:B, 3ze9:B, 3zea:B
5 5xxm:A 749 59 0.2198 0.0267 0.3390 0.69 5xxl:A, 5xxl:B, 5xxm:B, 5xxn:A, 5xxn:B, 5xxo:B, 5xxo:A
6 6k80:A 213 40 0.1319 0.0563 0.3000 3.6 5gi5:A, 5gi6:A, 5gi7:A, 5gi8:A, 5gi9:A, 5gif:A, 5gig:A, 5gih:A, 5gii:A, 3te4:A
7 5w1h:A 1301 33 0.1209 0.0085 0.3333 6.2 5w1i:A, 5w1i:C, 5wlh:A
8 7exz:A 324 31 0.1538 0.0432 0.4516 8.1 7bvr:A, 7bvr:C, 7bvr:E, 7bvr:G, 7exz:C, 7exz:E, 7exz:G, 7xrf:A, 7xrf:C, 7xrf:E, 7xrf:G
9 1zbd:A 177 39 0.1429 0.0734 0.3333 9.3 3rab:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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