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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP
>protein
PPKIQQLVQDIASLTLLEISDLNELLKKTLK

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7o9k:t1 46 31 1.0000 0.6739 1.0000 9.95e-15 6gaw:CL, 6gb2:CL, 7l08:TA, 7l20:TA, 7nqh:CL, 7nql:CL, 7nsh:CL, 7nsi:CL, 7nsj:CL, 7o9k:t3, 7o9m:t1, 7o9m:t3, 7og4:t1, 7og4:t3, 8oin:B1, 8oiq:B1, 7po4:w, 6vlz:TA, 6vmi:TA, 6ydp:CL, 6ydw:CL, 6zs9:t3, 6zsa:t1, 6zsa:t3, 6zsb:t1, 6zsb:t3, 6zsc:t1, 6zsc:t3, 6zsd:t1, 6zsd:t3, 6zse:t1, 6zse:t3, 6zsg:t1, 6zsg:t3
2 6idv:A 425 30 0.3226 0.0235 0.3333 7.7 6idv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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