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BioLiP
>protein
PPGPPGPPGPPGPKGDQGPPGPPGPPGPPG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8zmo:A 30 30 1.0000 1.0000 1.0000 1.45e-07 8zmo:C, 8zmo:E
2 6x3m:F 366 28 0.5000 0.0410 0.5357 0.006 6wwx:A, 6wwx:B, 6wwx:C, 6wxa:B, 6wxa:C, 6x3m:B, 6x3m:A, 6x3m:C, 6x3m:D, 6x3m:E, 6x3m:H, 6x3m:I, 6x3m:G
3 6x3m:F 366 27 0.4667 0.0383 0.5185 0.047 6wwx:A, 6wwx:B, 6wwx:C, 6wxa:B, 6wxa:C, 6x3m:B, 6x3m:A, 6x3m:C, 6x3m:D, 6x3m:E, 6x3m:H, 6x3m:I, 6x3m:G
4 6hiv:DD 791 28 0.4000 0.0152 0.4286 4.4 6hiw:DD, 6hiy:DD, 7pua:DD, 7pub:DD, 6sga:DD, 6sgb:DD
5 7ane:ad 694 28 0.4000 0.0173 0.4286 6.1
6 7aor:ad 801 28 0.4000 0.0150 0.4286 7.2
7 6j0p:A 564 9 0.2333 0.0124 0.7778 9.2 6j0p:B, 6j1e:A, 6j1f:A, 6j1f:B, 6j1g:A, 6j1i:A, 6j1j:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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