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BioLiP
>protein
PPGPPGPPGFRGPAGPNGIPGPPGPPGPPG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6a0c:A 30 30 1.0000 1.0000 1.0000 3.39e-09 6a0c:C
2 6x3m:F 366 28 0.5000 0.0410 0.5357 0.015 6wwx:A, 6wwx:B, 6wwx:C, 6wxa:B, 6wxa:C, 6x3m:B, 6x3m:A, 6x3m:C, 6x3m:D, 6x3m:E, 6x3m:H, 6x3m:I, 6x3m:G
3 6x3m:F 366 27 0.4333 0.0355 0.4815 0.081 6wwx:A, 6wwx:B, 6wwx:C, 6wxa:B, 6wxa:C, 6x3m:B, 6x3m:A, 6x3m:C, 6x3m:D, 6x3m:E, 6x3m:H, 6x3m:I, 6x3m:G
4 3wkg:A 410 19 0.3333 0.0244 0.5263 0.92 3wkh:A, 3wki:A
5 8tw0:A 30 30 0.6333 0.6333 0.6333 1.3
6 6j0p:A 564 9 0.2667 0.0142 0.8889 2.2 6j0p:B, 6j1e:A, 6j1f:A, 6j1f:B, 6j1g:A, 6j1i:A, 6j1j:A
7 8oq6:A 336 12 0.2667 0.0238 0.6667 6.9 8op9:A, 8op9:B, 8op9:E, 8op9:C, 8op9:D, 8oq6:B, 8oq6:C, 8oq6:D, 8oq6:E, 8oq7:A, 8oq7:B, 8oq7:C, 8oq7:D, 8oq7:E, 8oq8:A, 8oq8:E, 8oqa:A, 8oqa:B, 8oqa:C, 8oqa:D, 8oqa:E, 8rh4:A, 8rh4:E, 8rh4:B, 8rh4:C, 8rh4:D, 8rh7:E, 8rh7:D, 8rh7:A, 8rh7:B, 8rh7:C, 8rh8:A, 8rh8:B, 8rh8:E, 8rh8:C, 8rh8:D, 8rh9:B, 8rhg:A, 8rhg:E, 8rhg:B, 8rhg:C, 8rhg:D
8 6r7x:A 629 21 0.3333 0.0159 0.4762 8.8 5oc9:A, 5oc9:B, 6r65:A, 6r65:B, 6r7x:B, 6r7y:A, 6r7y:B
9 2h59:A 246 12 0.2667 0.0325 0.6667 9.9 4buz:A, 4bv2:A, 4bv2:B, 3d4b:A, 3d81:A, 2h2d:A, 2h2f:A, 2h2g:A, 2h2h:A, 2h2i:A, 2h4f:A, 2h4h:A, 2h4j:A, 2h59:B, 3jr3:A, 3pdh:A, 1yc5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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