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BioLiP
>protein
PPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTPPTVPPPPRVVDKLSLCVAPGKACSPAASEITGLSTA
VLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRYDFPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSE
HGPRKSYSLGSIYTRLYGQSPPDSHTAEGDVLALLSICQWRPQALLRWVDAHARPFGTIRPMYG

The query sequence (length=224) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8vl7:C 224 224 0.9955 0.9955 0.9955 3.88e-163 9ava:A, 9ava:B, 9ava:C, 9ava:D, 9ava:E, 9ava:F, 9ava:G, 9ava:H, 9ava:I, 9ava:J, 9ava:K, 9ava:L, 7tqq:A, 7tqq:B, 7tqq:E, 7tqq:F, 8vl7:A, 8vl7:B, 8vl7:D, 8vl7:E, 8vl7:F, 8vl7:G, 8vl7:H
2 5yws:B 234 228 0.7768 0.7436 0.7632 2.26e-114 3b6o:A, 3b6o:B, 3b6o:C, 3b6o:D, 3b6p:A, 3b6p:B, 3b6p:C, 3b6p:D, 8hcc:A, 8hcc:B, 8hcc:C, 8hcc:D, 8hcd:B, 8hcd:C, 8hcd:D, 8hcd:E, 8hce:B, 8hcf:B, 8hcg:A, 8hch:A, 8hch:B, 8hch:C, 8hch:D, 2ioc:B, 2ioc:A, 3mxi:B, 3mxi:A, 3mxm:A, 3mxm:B, 2o4g:A, 2o4g:B, 2o4g:C, 2o4g:D, 2o4i:A, 2o4i:B, 2oa8:B, 2oa8:A, 3u3y:A, 3u3y:B, 3u6f:B, 3u6f:A, 7u8y:A, 7u8y:B, 4ynq:A, 4ynq:C, 4ynq:D, 4ynq:B, 5yws:A, 5ywt:B, 5ywt:A, 5ywu:A, 5ywu:B, 5ywv:A, 5ywv:B
3 6a47:A 224 219 0.4464 0.4464 0.4566 1.59e-54 6a46:A, 6a46:B, 6a47:B, 6a4b:B, 6a4b:A, 6a4b:C, 6a4b:D, 6a4b:E, 6a4b:F
4 4ail:C 750 92 0.1205 0.0360 0.2935 0.095 2jgu:A
5 9b8t:A 1146 48 0.0714 0.0140 0.3333 0.11 9b8s:A, 9f6d:A, 9f6e:A, 9f6f:A, 9f6i:A, 9f6j:A, 9f6k:A, 9f6l:A
6 4k8x:A 759 44 0.0759 0.0224 0.3864 0.95 6is7:A, 6is7:B, 6isf:A, 6isf:B, 6isg:A, 6ish:A, 6isi:A, 4k8z:A, 5omf:A, 5omq:A, 5omv:A, 7om3:A, 7omb:A, 7omg:A, 6q4t:A, 7rsr:A, 7rss:A, 7rsu:A, 8t3x:A, 7tqw:A, 5vu6:A, 5vu7:A, 5vu9:A
7 6wya:A 756 44 0.0714 0.0212 0.3636 2.0 6wyb:A
8 1uqw:A 487 114 0.1384 0.0637 0.2719 2.1 1uqw:B
9 1d5a:A 733 44 0.0714 0.0218 0.3636 2.9
10 5why:A 418 26 0.0580 0.0311 0.5000 3.7
11 1i7l:A 309 29 0.0580 0.0421 0.4483 7.0 1i7l:B
12 7vqm:A 584 44 0.0714 0.0274 0.3636 7.4 7vqm:B, 7vqm:C, 7vqm:D
13 8yts:A 83 27 0.0536 0.1446 0.4444 9.2 8yts:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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