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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWNMRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVK
YREANGLPLMESNCFDPNKIQLPEDED

The query sequence (length=107) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7v2d:e 107 107 1.0000 1.0000 1.0000 1.92e-76 5lnk:w, 7v2c:e, 7v2e:e, 7v2f:e, 7v2h:e, 7v2k:e, 7v2r:e, 7v30:e, 7v31:e, 7v32:e, 7v33:e, 7v3m:e, 7vbl:e, 7vbp:e, 7vc0:e, 7vwl:e, 7vxs:e, 7vy1:e, 7vy9:e, 7vye:e, 7vyg:e, 7vyi:e, 7vys:e, 7vz8:e, 7vzv:e, 7vzw:e, 7w00:e, 7w0h:e, 7w0r:e, 7w0y:e, 7w1o:e, 7w1p:e, 7w1t:e, 7w1u:e, 7w1v:e, 7w1z:e, 7w20:e, 7w2k:e, 7w2l:e, 7w2r:e, 7w2u:e, 7w2y:e, 7w31:e, 7w32:e, 7w35:e, 7w4c:e, 7w4d:e, 7w4e:e, 7w4f:e, 7w4g:e, 7w4k:e, 7w4l:e, 7w4m:e, 7w4n:e, 7w4q:e
2 5xtc:e 97 95 0.7850 0.8660 0.8842 3.58e-62 5xtd:e, 5xth:e, 5xti:e, 5xti:Be
3 4wd6:A 219 57 0.1495 0.0731 0.2807 0.41 4wd6:B, 4zej:A, 4zej:B
4 2yck:X 272 22 0.1028 0.0404 0.5000 1.1 2yci:X, 2ycj:A
5 8bh6:s 84 46 0.1308 0.1667 0.3043 1.3 7aso:I, 7bge:s, 8bh7:s, 8byv:s, 6fxc:As, 6fxc:Bs, 7kwg:s, 5li0:s, 5nd8:s, 5nd9:s, 5ngm:As, 7nhl:t, 7nhm:t, 8p2f:t, 8p2g:t, 8p2h:t, 7p48:s, 6s0x:s, 6s13:s, 5tcu:SI, 8y38:s, 8y39:s, 6yef:s
6 7aor:w 175 23 0.1402 0.0857 0.6522 1.5
7 6p25:B 690 55 0.1215 0.0188 0.2364 3.2 6p2r:B
8 3o1a:A 383 35 0.1495 0.0418 0.4571 3.9 3oo3:A
9 6hiv:BM 245 94 0.2150 0.0939 0.2447 5.6 6hix:BM
10 8ity:4 365 24 0.1028 0.0301 0.4583 8.0 8iue:4, 8iuh:4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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