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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PPDMNRNTEWFMYPGVWTTYMLILFFGWLVVLSVSGCSPGMAWTVVNLAHFVVTYHSFHWMKGTPFADDQGIYNGLTWWE
QMDNGQQLTRNRKFLTLVPVVLYLIASHTTDYRHPWLFLNTLAVMVLVVAKFPNMHKVRIFGINGD

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7yjk:D 156 146 1.0000 0.9359 1.0000 6.80e-108 7yjk:H, 7yjm:D, 7yjn:D, 7yjo:D
2 7yiu:D 153 143 0.4247 0.4052 0.4336 6.38e-33 7cqi:A, 7cqk:A, 6m4o:A, 7yiy:D
3 8iaj:D 182 146 0.3904 0.3132 0.3904 1.72e-21 8iaj:H, 8iam:D, 8iam:H, 8qof:A, 8qof:E, 8qog:A
4 8c80:A 184 144 0.3425 0.2717 0.3472 1.18e-18 8c81:A, 8c82:A, 8c82:E
5 7b9v:P 74 32 0.0822 0.1622 0.3750 0.61 6bk8:H, 7dco:S, 6exn:P, 5gm6:S, 5gmk:S, 6j6g:S, 6j6h:S, 6j6n:S, 6j6q:S, 5lj3:P, 5lj5:P, 5mps:P, 5mq0:P, 5wsg:S, 5y88:P, 5ylz:P
6 4m0c:A 212 21 0.0685 0.0472 0.4762 3.3 4m0c:B
7 6lkc:B 533 51 0.1233 0.0338 0.3529 6.2 6lkc:A
8 7sze:B 329 28 0.0890 0.0395 0.4643 6.9 7sze:A, 7sze:C, 7szf:A, 7szf:B, 7szf:C, 7szg:A, 7szg:B, 7szg:C, 6wnc:A, 6wnc:B, 6wnc:C, 6wnd:A, 6wnd:B, 6wnd:C
9 6c01:A 819 80 0.1575 0.0281 0.2875 7.4 6c01:B, 6c02:A, 6c02:B
10 4gfr:A 529 87 0.1712 0.0473 0.2874 7.7 8i5j:A, 8i5j:B, 8i5k:A, 1zu0:A
11 6wn3:B 328 23 0.0822 0.0366 0.5217 9.0 7szh:A, 7szh:B, 7szh:C, 6wn3:A, 6wn3:C, 6wnb:A, 6wnb:B, 6wnb:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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