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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSNIELYGPYSKPLSNCAGVGTCATCMVEIVNGKELLNPRTDI
EKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQLPEWKAHEWNIPKNI

The query sequence (length=128) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7wff:c 128 128 1.0000 1.0000 1.0000 3.91e-94 7wg5:c
2 7eu3:8 119 118 0.6562 0.7059 0.7119 9.19e-62 7f9o:8
3 3zyy:X 628 45 0.1172 0.0239 0.3333 4.80e-04 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
4 1l5p:A 93 44 0.1406 0.1935 0.4091 0.010 1l5p:B, 1l5p:C
5 5frt:E 105 52 0.1641 0.2000 0.4038 0.020 5ffi:E
6 1iue:A 98 73 0.1797 0.2347 0.3151 0.27 1iue:B
7 1b9r:A 105 70 0.1641 0.2000 0.3000 0.35
8 5frt:A 119 66 0.1406 0.1513 0.2727 0.40 5ffi:A, 5ffi:B, 5ffi:C, 5ffi:D, 5frt:B, 5frt:C, 5frt:D, 6yav:E, 6yav:A, 6yav:B, 6yav:C, 6yav:D
9 6ikg:A 644 48 0.1250 0.0248 0.3333 0.46 6ikg:B
10 4ltu:A 106 74 0.1797 0.2170 0.3108 1.1 4ltu:B
11 3dy5:A 1002 28 0.0781 0.0100 0.3571 2.6 3dy5:C, 1u5u:A, 1u5u:B
12 6kd7:A 327 42 0.1172 0.0459 0.3571 2.9
13 3hui:A 112 64 0.1641 0.1875 0.3281 3.4
14 2csv:A 72 49 0.1250 0.2222 0.3265 3.9
15 6nbl:D 107 66 0.1562 0.1869 0.3030 4.6 1gpx:A, 5gxg:B, 4jws:C, 4jws:D, 4jwu:C, 4jwu:D, 4jx1:C, 4jx1:D, 4jx1:G, 4jx1:H, 3lb8:C, 3lb8:D, 2m56:B, 6nbl:C, 1oqq:A, 1oqq:B, 1oqr:A, 1oqr:B, 1oqr:C, 1pdx:A, 1put:A, 1r7s:A, 1r7s:B, 1r7s:C, 3w9c:B, 1xln:A, 1xln:B, 1xlo:A, 1xlo:B, 1xlp:A, 1xlp:B, 1xlp:C, 1xlq:A, 1xlq:B, 1xlq:C, 1yji:A, 1yjj:A
16 3ah7:A 109 81 0.1719 0.2018 0.2716 4.9
17 1xxr:B 154 34 0.0938 0.0779 0.3529 7.2 1xxr:C, 1xxr:D
18 5oes:E 448 25 0.0703 0.0201 0.3600 10.0 5oes:A, 5oes:B, 5oes:C, 5oes:D, 5oes:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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