Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PNPSADTQPSDWAYIAEGGAHIVFSYQGQSKTYATRALRVRKPSNDVSGQWRRNILPKLVPRQLLTTSREVTLEEGWYKE
LLAMVDVVDRRGVLLEDLTSNVDDDGAITVAIEIKPKWGFLPCAGHLQPPESVSIKSHVSRFRLHQHFRGRADDPPYDPL
DLFSGDKMRMRTALDGLWTMWEISRGKSNNWKVFIGSKEISPDDLQRGLLPMGGDDLVTNITQLTLSALQTSSALPLLKN
LQQNLDPIDISSLAALFQAEHPNSPIFDPDLIAEVSAVELNSFVDIYISDPQAGQRMDSWSLRERIIAYALSAIFKDCSL
FVRGVLKHAEDGAWRLVSGGESVKVIDLDLKPVKNIQKWAETDEKVWKHWLKTKGTR

The query sequence (length=377) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5xu6:C 379 379 1.0000 0.9947 0.9947 0.0 5xu6:A, 5xu6:B, 5xu6:D
2 6fl3:B 420 427 0.2785 0.2500 0.2459 2.07e-21 4axc:A, 4axf:A, 6fjk:B, 6fl8:B, 6gfg:B, 6gfg:A, 6gfh:A, 6gfh:B, 4lv7:B, 3udt:A, 3udt:B, 3udz:A, 3udz:B, 2xan:A, 2xao:A
3 4lv7:A 390 429 0.2944 0.2846 0.2587 1.97e-19 3uds:A, 3uds:B
4 4axd:A 433 447 0.2971 0.2587 0.2506 3.85e-19 4aqk:A, 4axe:A, 6fjk:A, 6fl3:A, 6fl8:A, 2xal:A, 2xal:B, 2xam:A, 2xam:B, 2xan:B, 2xao:B, 2xar:A, 2xar:B
5 5mwl:A 421 316 0.2095 0.1876 0.2500 2.86e-10 5mw8:A, 5mwl:B, 5mwm:A
6 4xz6:A 291 165 0.1061 0.1375 0.2424 1.0 4xz6:B
7 4b45:A 334 41 0.0371 0.0419 0.3415 3.4
8 1kkt:A 475 28 0.0265 0.0211 0.3571 7.1 1kre:B, 1kre:A, 1krf:A, 1krf:B, 2ri9:A, 2ri9:B
9 2glf:A 450 57 0.0504 0.0422 0.3333 9.3 2glf:B, 2glf:C, 2glf:D
10 6l8h:A 466 66 0.0557 0.0451 0.3182 9.9 6l8h:B, 6l8h:C, 6l8h:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218