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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFNPLLDGNNLSTRIGKGETTDMRFTKELNK
AQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEI
QSLIHVKTKEFGKTLNIMKNILRGKSQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNIL
LFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVDP

The query sequence (length=279) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8cen:M 310 294 0.9749 0.8774 0.9252 0.0 8ceo:M, 5fmf:P, 6gyk:M, 6gyl:M, 6gym:M, 7ml0:M, 7ml1:M, 7ml2:M, 7o4i:M, 7o4j:M, 7o72:M, 7o73:M, 7o75:M, 5oqj:M, 5oqm:M, 7zs9:M, 7zsa:M, 7zsb:M
2 4v1n:M 299 290 0.9498 0.8863 0.9138 0.0 4bbr:M, 4bbs:M, 4v1o:M
3 7ml4:M 234 273 0.8387 1.0000 0.8571 5.87e-166 5fyw:M, 5fz5:M
4 5iy7:M 310 285 0.3477 0.3129 0.3404 3.46e-49 1c9b:A, 1c9b:E, 1c9b:I, 1c9b:M, 1c9b:Q, 1dl6:A, 5iy8:M, 5iy9:M, 5iyb:M, 5iyc:M, 5iyd:M, 7nvu:M, 7nw0:M, 6o9l:M, 2phg:A, 1rly:A, 8s51:M, 8s52:M, 8s5n:M, 1vol:A, 8wak:R, 8wal:R, 8wan:R, 8wao:R, 8wap:R, 8waq:R, 8war:R, 8was:R, 7zwc:M, 7zx8:M, 7zxe:M
5 3k1f:M 185 174 0.2330 0.3514 0.3736 5.72e-43
6 5iy6:M 260 268 0.2867 0.3077 0.2985 8.72e-39 8bvw:M, 8byq:M, 8bz1:M, 7edx:R, 7eg7:R, 7eg8:R, 7eg9:R, 7ega:R, 7egb:R, 7egc:R, 7ena:BA, 7enc:BA, 8gxq:BA, 8gxs:BA, 5iya:M, 7lbm:O, 7nvr:M, 7nvs:M, 7nvt:M, 7nvy:M, 7nvz:M, 7zwd:M, 7zx7:M
7 1d3u:B 201 196 0.1900 0.2637 0.2704 2.99e-16 1ais:B
8 1pft:A 50 48 0.0609 0.3400 0.3542 7.52e-05
9 6cnb:R 522 247 0.1864 0.0996 0.2105 6.25e-04 8cen:O, 8ceo:O, 6cnc:R, 6cnd:R, 6cnf:R, 6eu0:Y, 6f40:U, 6f41:U, 6f42:U, 6f44:U, 8ffz:H, 5fmf:Q, 5fyw:O, 5fz5:O, 6gyk:O, 6gyl:O, 6gym:O, 7ml0:O, 7ml1:O, 7ml2:O, 7ml4:O, 1ngm:A, 1ngm:E, 1ngm:I, 1ngm:M, 1nh2:A, 7o4i:O, 7o4j:O, 7o72:O, 7o73:O, 7o75:O, 7oh9:K, 7oha:K, 7ohb:K, 5oqj:O, 5oqm:O, 7q5b:Y, 1rm1:A, 5sva:j, 4v1n:O, 4v1o:O, 1ytb:A, 1ytb:B, 1ytf:A, 7z7n:D, 7zb5:D, 7zb5:G, 7zs9:O, 7zsa:O, 7zsb:O
10 6cnb:R 522 69 0.0860 0.0460 0.3478 0.001 8cen:O, 8ceo:O, 6cnc:R, 6cnd:R, 6cnf:R, 6eu0:Y, 6f40:U, 6f41:U, 6f42:U, 6f44:U, 8ffz:H, 5fmf:Q, 5fyw:O, 5fz5:O, 6gyk:O, 6gyl:O, 6gym:O, 7ml0:O, 7ml1:O, 7ml2:O, 7ml4:O, 1ngm:A, 1ngm:E, 1ngm:I, 1ngm:M, 1nh2:A, 7o4i:O, 7o4j:O, 7o72:O, 7o73:O, 7o75:O, 7oh9:K, 7oha:K, 7ohb:K, 5oqj:O, 5oqm:O, 7q5b:Y, 1rm1:A, 5sva:j, 4v1n:O, 4v1o:O, 1ytb:A, 1ytb:B, 1ytf:A, 7z7n:D, 7zb5:D, 7zb5:G, 7zs9:O, 7zsa:O, 7zsb:O
11 8ity:V 361 177 0.1541 0.1191 0.2429 7.12e-04 8iue:V, 8iuh:V, 5n9g:A, 5n9g:F, 4roc:A, 4rod:A, 4roe:A
12 6eu0:Z 339 185 0.1326 0.1091 0.2000 8.15e-04 6f40:V, 6f41:V, 6f42:V, 6f44:V, 7q5b:Z
13 6eu0:Z 339 69 0.0860 0.0708 0.3478 0.001 6f40:V, 6f41:V, 6f42:V, 6f44:V, 7q5b:Z
14 7vg3:A 860 30 0.0502 0.0163 0.4667 0.27 7vg2:A
15 7eld:A 1137 30 0.0430 0.0106 0.4000 0.34 7ele:A
16 2m9w:A 63 31 0.0394 0.1746 0.3548 1.6 8vg0:T, 8vg1:T
17 4qec:A 248 45 0.0609 0.0685 0.3778 1.6 4qec:B, 4qed:A, 4qed:B
18 6l5s:A 454 32 0.0466 0.0286 0.4062 1.7 6l5p:A, 6l5q:A, 6l5r:A, 6l7h:A
19 6i9w:A 259 32 0.0394 0.0425 0.3438 2.7 6i9w:B, 6i9w:C, 7qy3:A, 7qy3:B, 7qy3:G, 7qy3:I
20 3krf:D 295 191 0.1434 0.1356 0.2094 3.2 3kra:A, 3kra:D, 3krc:A, 3krc:D, 3krf:A, 3kro:A, 3kro:D, 3krp:A, 3krp:D, 3oab:A, 3oab:D, 3oac:D
21 3pih:A 836 68 0.0789 0.0263 0.3235 3.4
22 8k32:C 333 36 0.0609 0.0511 0.4722 5.0 8k32:A, 8k32:B, 8k32:D
23 1gth:A 1019 85 0.0753 0.0206 0.2471 5.8 8f5w:A, 8f5w:B, 8f5w:C, 8f5w:D, 8f61:A, 8f61:B, 8f61:C, 8f61:D, 8f6n:A, 8f6n:B, 8f6n:C, 8f6n:D, 1gt8:A, 1gt8:B, 1gt8:C, 1gt8:D, 1gte:A, 1gte:B, 1gte:C, 1gte:D, 1gth:B, 1gth:C, 1gth:D, 1h7w:A, 1h7w:B, 1h7w:C, 1h7w:D, 1h7x:A, 1h7x:B, 1h7x:C, 1h7x:D, 7ljs:A, 7ljs:B, 7ljs:C, 7ljs:D, 7ljt:A, 7ljt:B, 7ljt:C, 7ljt:D, 7lju:A, 7lju:C, 7lju:D, 7lju:B, 7m31:A, 7m31:B, 7m31:C, 7m31:D, 7m32:A, 7m32:B, 7m32:C, 7m32:D
24 7wbb:F 699 60 0.0645 0.0258 0.3000 6.4
25 6n67:A 388 45 0.0573 0.0412 0.3556 7.4 6n0t:A
26 7ykk:E 735 60 0.0645 0.0245 0.3000 7.4 7nku:A, 7nku:F, 7nku:B, 7nku:C, 7nku:D, 7nku:E, 7wbb:A, 7wbb:B, 7wbb:D, 7wbb:E, 7wbb:C, 7wd3:A, 7wd3:B, 7wd3:C, 7wd3:D, 7wd3:E, 7wd3:F, 7ykk:D, 7ykk:F, 7ykk:A, 7ykk:B, 7ykk:C, 7ykl:F, 7ykl:A, 7ykl:B, 7ykl:C, 7ykl:D, 7ykl:E, 7ykt:F, 7ykt:A, 7ykt:B, 7ykt:C, 7ykt:D, 7ykt:E, 7ykz:D, 7ykz:C, 7ykz:F, 7ykz:B, 7ykz:E, 7ykz:A, 7z11:A, 7z11:B, 7z11:C, 7z11:D, 7z11:F, 7z11:E, 7z34:w, 7z34:m, 7z34:n, 7z34:t, 7z34:Aa, 7z34:x
27 3l77:A 235 55 0.0609 0.0723 0.3091 9.0 3tn7:A, 3tn7:B
28 4hc7:A 108 28 0.0358 0.0926 0.3571 9.8 3dfv:D, 3dfv:C, 3dfx:A, 3dfx:B, 4hc9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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