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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PMVTVTYDPSNAPSFQQEIANAAQIWNSSVRNVQLRAGGNADFSYYEGNDSRGSYAQTDGHGRGYIFLDYQQNQQYDSTR
VTAHETGHVLGLPDHYQGPCSELMSGGGPGPSCTNPYPNAQERSRVNALWANG

The query sequence (length=133) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4hx3:A 134 133 1.0000 0.9925 1.0000 5.04e-98 1c7k:A, 4hx3:C, 4hx3:E, 4hx3:G, 4hx3:I, 4hx3:K, 1kuh:A
2 1hv5:E 165 124 0.2932 0.2364 0.3145 0.015 1hv5:A, 1hv5:B, 1hv5:C, 1hv5:D, 1hv5:F
3 7mq8:LW 453 74 0.1729 0.0508 0.3108 1.6 7mq9:LW
4 7mqa:LW 452 74 0.1729 0.0509 0.3108 1.9
5 1r54:A 206 57 0.1579 0.1019 0.3684 2.4 1r55:A
6 2c1v:A 335 31 0.0902 0.0358 0.3871 3.1 2c1u:A, 2c1u:B, 2c1u:C, 2c1u:D, 2c1v:B
7 4yu6:A 754 64 0.1579 0.0279 0.3281 3.3 4yu5:A, 4yu5:B, 4yu6:B
8 5xnr:A 385 65 0.1579 0.0545 0.3231 3.9 7d29:A, 7d2a:A
9 3hq6:A 324 31 0.0752 0.0309 0.3226 5.8 3hq6:B, 3hq8:A, 3hq8:B, 3hq9:A, 3hq9:B
10 1fbl:A 367 19 0.0827 0.0300 0.5789 6.7
11 1su3:B 416 19 0.0827 0.0264 0.5789 6.9 966c:A, 4auo:A, 4auo:B, 1ayk:A, 2ayk:A, 3ayk:A, 4ayk:A, 1cge:A, 1cgf:A, 1cgf:B, 1cgl:A, 1cgl:B, 2clt:A, 2clt:B, 1hfc:A, 2j0t:A, 2j0t:B, 2j0t:C, 3shi:A, 3shi:G, 3shi:M, 1su3:A, 2tcl:A
12 5evy:X 411 90 0.1729 0.0560 0.2556 7.8
13 8pj1:1 588 16 0.0677 0.0153 0.5625 7.8 6fec:w, 2krb:A, 8oz0:I, 8pj2:1, 8pj3:1, 8pj5:1, 8pj6:1
14 5gwd:A 239 25 0.0677 0.0377 0.3600 8.6 5czw:A, 5gwd:B, 5zjk:A, 5zjk:B, 5zjk:C, 5zjk:D, 5zjk:E, 5zjk:F, 5zjk:G, 5zjk:H, 5zjk:I, 5zjk:J, 5zjk:K, 5zjk:L, 5zjk:M, 5zjk:N, 5zjk:O, 5zjk:P, 5zjk:Q, 5zjk:R
15 6q55:A 461 24 0.0677 0.0195 0.3750 8.6 6q5a:A
16 8xxn:3B 536 16 0.0677 0.0168 0.5625 8.9 6zon:B, 6zp4:B, 6zvj:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218