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BioLiP
>protein
PMVLLHKSTHIFPTDFASVSRAFFNRYPNPYSPHVLSIDTISRNVDQEGNLRTTRLLKKSGKTETWIIEVSVVNPANSTM
KTYTRNLDHTGIMKVEEYTTYQFSATSSTIADSRVKFSSGFNMGIKSKVEDWSRTKFDENVKKSRMGMAFVIQK

The query sequence (length=154) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6kyl:D 160 160 1.0000 0.9625 0.9625 2.00e-109 6kyl:B
2 6i3y:F 182 168 0.3247 0.2747 0.2976 3.26e-21 6i3y:C
3 8ita:A 429 52 0.0974 0.0350 0.2885 0.94 8inp:A
4 6imj:A 412 133 0.1948 0.0728 0.2256 5.0 6imj:B, 6imk:A, 6iml:A, 6imn:B, 6imn:A
5 6ojz:D 361 29 0.0974 0.0416 0.5172 6.4 6ojx:A, 6ojx:B, 6ojx:C, 6ojz:A, 6ojz:B, 6ojz:C, 6ojz:E, 6ojz:F, 6ok2:A, 6ok2:B, 6ok2:C, 6ok2:D, 6ok2:E, 6ok2:F, 6okv:A, 6okv:B, 6okv:C, 6okv:D, 6okv:E, 6okv:F, 6olm:A, 6olm:B, 6olm:C, 6olm:D, 6olm:E, 6olm:F
6 3w81:A 616 35 0.0714 0.0179 0.3143 6.5 6i6r:A, 6i6r:B, 6i6x:A, 6i6x:B, 4kgj:B, 4kgj:A, 4kgl:B, 4kgl:A, 4kh2:B, 4kh2:A, 4obr:B, 4obr:A, 3w81:B, 3w82:A, 3w82:B
7 8r3q:D 676 28 0.0649 0.0148 0.3571 6.9 8r3q:B, 8r3q:A, 8r3q:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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