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BioLiP
>protein
PMVLLHKSTHIFPTDFASVSRAFFNRYPNPYSPHVLSIDTISRNVDQEGNLRTTRLLKKSGKLPTWITETWIIEVSVVNP
ANSTMKTYTRNLDHTGIMKVEEYTTYQFDSATSSTIADSRVKFSSGFNMGIKSKVEDWSRTKFDENVKKSRMGMAFVIQK

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6kyl:D 160 160 1.0000 1.0000 1.0000 7.92e-119 6kyl:B
2 6i3y:F 182 168 0.3250 0.2857 0.3095 1.13e-24 6i3y:C
3 6n7r:I 147 90 0.1313 0.1429 0.2333 0.80
4 7f8b:A 245 62 0.1313 0.0857 0.3387 5.9 7f8c:A
5 8r3q:D 676 28 0.0625 0.0148 0.3571 7.3 8r3q:B, 8r3q:A, 8r3q:C
6 3w81:A 616 35 0.0688 0.0179 0.3143 8.2 6i6r:A, 6i6r:B, 6i6x:A, 6i6x:B, 4kgj:B, 4kgj:A, 4kgl:B, 4kgl:A, 4kh2:B, 4kh2:A, 4obr:B, 4obr:A, 3w81:B, 3w82:A, 3w82:B
7 5tmb:A 451 124 0.2250 0.0798 0.2903 9.9 6bk0:A, 6bk1:A, 6bk2:A, 6bk3:A, 5tmd:A, 5tme:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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