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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PMTPFEAIGGEQCIEILVDTFYSYVSKHPDLSPIFPDDLTETARKQKQFLTQYLGGPNLYTEEHGHPMLRARHLPFEITP
KRAEAWLSCMEQAMDDTGVHGHIREFVFERLALTAQHMVNTPN

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5v3u:A 131 123 0.9919 0.9313 0.9919 1.78e-90 5v3t:A, 5v3t:B, 5v3u:B, 5v3v:A, 5v3v:B
2 2bkm:A 128 121 0.7073 0.6797 0.7190 4.04e-61 2bkm:B
3 1ux8:A 118 118 0.7073 0.7373 0.7373 1.07e-59
4 5d1v:A 121 118 0.4065 0.4132 0.4237 1.70e-27 5d1v:B
5 4uzv:A 129 123 0.3902 0.3721 0.3902 4.98e-26 2bmm:A
6 2xyk:B 130 122 0.3902 0.3692 0.3934 3.47e-25 2xyk:A
7 1ngk:B 127 126 0.3659 0.3543 0.3571 4.68e-25 1ngk:A, 1ngk:C, 1ngk:D, 1ngk:E, 1ngk:F, 1ngk:G, 1ngk:H, 1ngk:I, 1ngk:J, 1ngk:K, 1ngk:L, 2qrw:A, 2qrw:B, 2qrw:C, 2qrw:D, 2qrw:E, 2qrw:F, 2qrw:G, 2qrw:H, 2qrw:I, 2qrw:J, 2qrw:K, 2qrw:L
8 4uur:A 124 121 0.3252 0.3226 0.3306 1.19e-20 4uur:B
9 4c0n:A 150 96 0.2927 0.2400 0.3750 8.90e-14 4c44:A
10 4nk2:A 164 114 0.2602 0.1951 0.2807 6.33e-10 4nk1:A, 4nk1:B, 4nk2:B
11 4xdi:A 127 57 0.1707 0.1654 0.3684 1.04e-07 6cii:A, 4xdi:B
12 1s56:B 135 69 0.2033 0.1852 0.3623 4.84e-07 5ab8:A, 2gkm:A, 2gkm:B, 2gkn:A, 2gkn:B, 2gl3:A, 2gl3:B, 2gln:A, 2gln:B, 1idr:A, 1idr:B, 1rte:A, 1rte:B, 1s56:A, 1s61:A, 1s61:B
13 3aq5:A 117 90 0.2114 0.2222 0.2889 7.09e-06 3aq5:B, 3aq6:A, 3aq6:B, 3aq7:A, 3aq7:B, 3aq8:A, 3aq8:B, 3aq9:A, 3aq9:B
14 1dlw:A 116 102 0.1870 0.1983 0.2255 2.08e-05 1uvy:A
15 2hz1:A 123 59 0.1626 0.1626 0.3390 3.43e-05 2hz2:A, 2hz3:A, 1mwb:A, 1rtx:A, 1s69:A, 1s6a:A
16 1dly:A 121 94 0.2114 0.2149 0.2766 1.83e-04 1uvx:A
17 2ig3:A 127 121 0.2520 0.2441 0.2562 6.27e-04 2ig3:B
18 2ksc:A 123 59 0.1220 0.1220 0.2542 0.009 4l2m:A, 4l2m:B, 4max:A, 4max:B, 4max:C
19 6td7:A 126 124 0.2520 0.2460 0.2500 0.13
20 8tls:A 116 59 0.1545 0.1638 0.3220 0.35 8tls:B, 7tt9:A, 7tt9:B, 7tt9:C, 7tt9:D, 8ugz:A, 8ugz:B, 8ugz:C, 8ugz:D, 8uzu:A, 8uzu:B, 8uzu:C, 8uzu:D, 8vij:A, 8vij:B, 8vij:C, 8vij:D, 8vsh:A, 8vsh:B, 8vsh:C, 8vsh:D, 8w3a:A, 8w3a:B, 8w3a:C, 8w3a:D
21 3ck5:A 357 44 0.1301 0.0448 0.3636 1.0 3ck5:B, 3ck5:C, 3ck5:D
22 6bme:A 127 54 0.1463 0.1417 0.3333 1.7 6bme:B
23 1ntv:A 152 66 0.1382 0.1118 0.2576 4.0 1nu2:A, 1oqn:A, 1oqn:B
24 8d2k:A 1105 62 0.1545 0.0172 0.3065 4.1 8d2l:A, 8d2n:A, 8d2p:A
25 6wbr:A 942 62 0.1545 0.0202 0.3065 4.1 6wc0:A
26 8d2q:A 906 62 0.1545 0.0210 0.3065 4.1
27 8d2o:A 749 62 0.1545 0.0254 0.3065 4.3
28 2l51:A 102 19 0.0732 0.0882 0.4737 5.4 2l51:B
29 6ij9:D 388 31 0.0894 0.0284 0.3548 9.0
30 1qjs:A 408 34 0.1057 0.0319 0.3824 9.2 1qhu:A, 1qjs:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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