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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PMTCDKLPKVPVPPLEEFIKSNPLQFAYVLTDTFDCTTRVYVQPARLSPNQAATALDIRGSRIITNDFVGGPNNSAILNN
CTTGEKATWYFQYTNLNTPNGSSYCAYTCNGEEIAEYKCANNNNGTDPLQKQAVEVAKKVPNGDKIHYALDNCPEHHGCF
AFY

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7yax:A 166 163 1.0000 0.9819 1.0000 5.09e-122 7yax:B, 7yax:C, 7yax:D, 7ycb:A, 7ycb:B, 7ycb:C, 7ycb:D, 7ycd:A, 7ycd:B, 7ycd:C, 7ycd:D, 7ycf:A, 7ycf:B, 7ycf:C, 7ycf:D, 7yct:A, 7yct:B, 7yct:C, 7yct:D
2 6kfa:A 162 162 0.7239 0.7284 0.7284 2.67e-88 6kfb:A, 6kfd:A
3 7bpo:A 165 163 0.5337 0.5273 0.5337 4.19e-59 7bpo:B, 7br1:A, 7br1:B
4 7ry3:C 1048 119 0.1779 0.0277 0.2437 1.8 7m4p:B
5 6b9o:B 937 86 0.1043 0.0181 0.1977 7.7 6b9o:A, 6b9p:A, 6b9p:B
6 1sk8:A 435 63 0.0920 0.0345 0.2381 7.8 1sk9:A
7 3hqp:A 498 57 0.1166 0.0382 0.3333 9.0 3hqo:K, 3hqo:A, 3hqo:B, 3hqo:C, 3hqp:B, 3hqp:C, 3hqp:D, 3hqp:E, 3hqp:F, 3hqp:G, 3hqp:H, 3hqp:I, 3hqp:J, 3hqp:K, 3hqp:L, 3hqp:M, 3hqp:N, 3hqp:O, 3hqp:P, 3hqq:A, 3hqq:B, 3hqq:C, 3hqq:D, 3hqq:E, 3hqq:F, 3hqq:G, 3hqq:H, 3hqq:I, 3hqq:J, 3hqq:K, 3hqq:L, 3hqq:M, 3hqq:N, 3hqq:O, 3hqq:P, 3hqq:Q, 3hqq:R, 3hqq:S, 3hqq:T, 3hqq:U, 3hqq:V, 3hqq:W, 3hqq:X, 3pp7:B, 3qv6:A, 3qv7:D, 3qv7:A, 3qv8:D, 3srk:A
8 7ttl:C 617 26 0.0613 0.0162 0.3846 9.1 6n2w:A, 6n2w:B
9 7aat:A 401 35 0.0798 0.0324 0.3714 9.1 7aat:B, 8aat:A, 8aat:B, 9aat:A, 9aat:B, 1aka:A, 1aka:B, 1akb:A, 1akc:A, 1ama:A, 1ivr:A, 1map:A, 1maq:A, 1oxo:A, 1oxo:B, 1oxp:A, 1tar:A, 1tar:B, 1tas:A, 1tas:B, 1tat:A, 1tat:B
10 7ttj:A 643 26 0.0613 0.0156 0.3846 9.2 7ttl:B, 3v99:A
11 7ttj:B 590 26 0.0613 0.0169 0.3846 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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