Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PMPLLINLIVSLLGFVATVTLIPAFRGHFIAARLCGQDLNKTSRQQIPESQGVISGAVFLIILFCFIPFPFLPHHEFVAL
IGALLAICCMIFLGFADDVLNLRWRHKLLLPTAASLPLLMVYFTNFGNTTIVVPKPFRPILLDLGILYYVYMGLLAVFCT
NAINILAGINGLEAGQSLVISASIIVFNLVELEGDCRDDHVFSLYFMIPFFFTTLGLLYHNWYPSRVFVGDTFCYFAGMT
FAGVGILGHFSKTMLLFFMPQVFNFLYSLPQLLHIIPCPRHRIPRLNIKTGKLEMSYSKFKTKSLSFLGTFILKVAESLQ
LVTVHQSETEDGEFTECNNMTLINLLLKVLGPIHERNLTLLLLLLQILGSAITFSIRYQLV

The query sequence (length=381) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5o5e:A 381 381 1.0000 1.0000 1.0000 0.0 6bw5:A, 6bw5:B, 6bw5:C, 6bw6:A, 6bw6:B, 6bw6:C, 6bw6:D, 6fm9:A, 6fwz:A
2 6bw5:D 362 382 0.9370 0.9862 0.9346 0.0
3 6oz6:C 322 169 0.1155 0.1366 0.2604 1.25e-06 8cxr:C, 6oz6:B
4 9b70:B 341 265 0.1654 0.1848 0.2377 3.96e-06 9b70:A, 9b71:A, 9b71:B, 5ckr:A, 8cxr:A, 6oyh:A, 6oyh:C, 6oyh:B, 6oyh:D, 6oyz:A, 6oz6:A
5 7yh4:A 400 125 0.0866 0.0825 0.2640 1.3
6 5jnq:A 307 147 0.0919 0.1140 0.2381 1.5
7 5unf:A 386 110 0.0735 0.0725 0.2545 2.3 5unh:A, 5unh:B
8 5ung:B 410 110 0.0735 0.0683 0.2545 2.3 7jni:A, 7jni:B, 6jod:A, 5unf:B
9 6ygb:A 159 40 0.0315 0.0755 0.3000 2.4 6ygc:A, 6ygd:A
10 7kws:A 390 120 0.0761 0.0744 0.2417 3.1 7kws:B
11 8zfk:D 412 39 0.0394 0.0364 0.3846 3.8 8zfk:E, 8zfk:A, 8zfk:B, 8zfk:C
12 3e15:D 295 42 0.0394 0.0508 0.3571 6.5

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218