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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PMKGRFPIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLD
SGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEKQQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTG
KYKAALKAST

The query sequence (length=170) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7pnt:T 170 170 1.0000 1.0000 1.0000 4.14e-126 7a5f:T6, 7a5g:T6, 7a5i:T6, 7a5k:T6, 8any:AT, 8csp:T, 8csq:T, 8csr:T, 8css:T, 8cst:T, 8csu:T, 3j9m:AT, 8k2a:Sa, 7l08:AT, 6nu2:AT, 6nu3:AT, 7og4:AT, 8oir:AT, 8ois:AT, 7p2e:T, 7pnu:T, 7pnv:T, 7pnw:T, 7pnx:T, 7pny:T, 7pnz:T, 7po0:T, 7po1:T, 7po2:T, 7po3:T, 7qi4:AT, 7qi5:AT, 7qi6:AT, 8qrk:T, 8qrl:T, 8qrm:T, 8qrn:T, 6rw4:T, 6rw5:T, 6vlz:AT, 6vmi:AT, 8xt0:Sa, 8xt2:Sa, 6zm5:AT, 6zm6:AT, 6zs9:AT, 6zsa:AT, 6zsb:AT, 6zsc:AT, 6zsd:AT, 6zse:AT, 6zsg:AT
2 3jd5:c 168 168 0.8353 0.8452 0.8452 1.95e-109 6neq:c, 6nf8:c
3 5aj3:c 169 169 0.8882 0.8935 0.8935 1.40e-105 5aj4:Ac, 6gaw:Ac, 6gaz:Ac, 7nqh:Ac, 7nql:Ac, 7nsi:Ac, 7nsj:Ac, 8oin:AT, 8oip:AT, 6ydp:Ac, 6ydw:Ac
4 6ywe:4 137 113 0.1529 0.1898 0.2301 0.058 6yws:4, 6ywv:4, 6ywx:4, 6ywy:4
5 6xyw:AH 110 107 0.1529 0.2364 0.2430 0.23
6 6yws:h 98 86 0.1176 0.2041 0.2326 0.46
7 1zxv:A 728 25 0.0824 0.0192 0.5600 1.9 1j7n:A, 4pkw:A, 1pww:A
8 1jky:A 748 25 0.0824 0.0187 0.5600 1.9 5d1s:A, 5d1t:A, 5d1u:A, 4dv8:A, 1j7n:B, 4pkq:A, 4pkr:A, 4pks:A, 4pkt:A, 4pku:A, 4pkv:A, 1pwp:A, 1pwp:B, 1pwq:A, 1pwq:B, 1pwu:A, 1pwu:B, 1pwv:A, 1pwv:B, 1pww:B, 4wf6:A, 4xm6:A, 4xm7:A, 4xm8:A, 1yqy:A, 1zxv:B
9 7pkt:F 129 96 0.1294 0.1705 0.2292 2.7
10 4z7x:A 211 27 0.0706 0.0569 0.4444 3.8 4z7x:B
11 2nqp:C 264 70 0.1000 0.0644 0.2429 5.8 2nqp:D, 2nr0:A, 2nr0:B, 2nr0:C, 2nr0:D, 2nre:A
12 7qh7:6 292 25 0.0647 0.0377 0.4400 7.1
13 8a9k:A 998 38 0.0647 0.0110 0.2895 7.2
14 1np7:A 483 29 0.0765 0.0269 0.4483 7.3 1np7:B
15 7o9k:6 331 25 0.0647 0.0332 0.4400 7.3 7a5f:63, 7a5g:63, 7a5h:6, 7a5i:63, 7a5j:6, 7a5k:63, 3j7y:6, 3j9m:6, 6nu2:6, 6nu3:6, 7o9m:6, 7of0:6, 7of2:6, 7of3:6, 7of4:6, 7of5:6, 7of6:6, 7of7:6, 7oi6:6, 7oi7:6, 7oi8:6, 7oi9:6, 7oia:6, 7oib:6, 7oic:6, 7oid:6, 7oie:6, 5ool:6, 5oom:6, 7pd3:6, 7qh6:6, 8qu5:6
16 5ebz:A 655 55 0.1000 0.0260 0.3091 7.7 5ebz:B, 5ebz:C, 5ebz:D, 5ebz:E, 5ebz:F, 5ebz:G, 5ebz:H, 5ebz:L, 5ebz:I, 5ebz:K, 5ebz:J
17 7kzv:U 1198 38 0.0647 0.0092 0.2895 7.9 7kzt:U, 6vaa:A, 6vae:A, 6vaf:A
18 1wuw:A 45 25 0.0471 0.1778 0.3200 8.5 1wuw:B
19 8any:6 354 25 0.0647 0.0311 0.4400 9.3 6i9r:6, 8k2a:Ll, 8k2b:Ll, 7l08:6, 7l20:6, 7odr:6, 7ods:6, 7odt:6, 7og4:6, 8oir:Bn, 8oit:Bn, 8pk0:6, 7po4:6, 7qi4:6, 7qi5:6, 7qi6:6, 8qsj:6, 8qu1:6, 6vlz:6, 6vmi:6, 8xt0:Ll, 8xt1:Ll, 8xt2:Ll, 8xt3:Ll, 6zm5:6, 6zm6:6, 6zs9:6, 6zsa:6, 6zsb:6, 6zsc:6, 6zsd:6, 6zse:6, 6zsg:6
20 1ygp:A 858 49 0.0941 0.0186 0.3265 9.6 1ygp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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