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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PLVVATKPSSEQYILGEILSLLLEKHHIPIKRAFGIGGGTMNIHPALIRGDFDLYVEYTGTAWVNTLKNPLTQKVDFETI
KKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQKYAIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLMKAYRFHFRSLHE
MDINLRYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFFPNYQAGIVIRKETIKKYPEALKILEKLDSKINDETMQD
LNYQVEVLKKSPKIVAKDFLERLGL

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8dp7:A 265 265 1.0000 1.0000 1.0000 0.0 8dp7:B, 8dp7:C, 8dp7:D, 8dp7:E
2 7s7x:A 278 271 0.3849 0.3669 0.3764 1.93e-57 7s7x:B, 7s7x:C, 6v1r:A
3 1sw1:A 270 268 0.3472 0.3407 0.3433 2.81e-47 1sw1:B, 1sw4:A, 1sw4:B
4 7s7t:A 509 189 0.2943 0.1532 0.4127 8.33e-46 8i4o:A, 8i4o:C, 8i4o:E, 8i4o:G, 8i4o:I, 8i4o:K
5 7s7t:A 509 74 0.0868 0.0452 0.3108 0.090 8i4o:A, 8i4o:C, 8i4o:E, 8i4o:G, 8i4o:I, 8i4o:K
6 3ppo:A 272 267 0.3396 0.3309 0.3371 2.31e-45 3ppo:B, 3ppq:A, 3ppq:B, 3ppr:A, 3ppr:B
7 7txl:A 275 273 0.3585 0.3455 0.3480 1.44e-44 7txk:A, 7txk:B, 7txl:B
8 6eyh:A 280 264 0.3283 0.3107 0.3295 1.27e-42 6eyl:A, 6eyl:B, 5nxy:A, 5nxy:C, 3r6u:A
9 1uwk:A 554 100 0.1019 0.0487 0.2700 1.1 1uwk:B, 1uwl:A, 1uwl:B, 2v7g:A, 2v7g:B, 2v7g:C, 2v7g:D, 1w1u:A, 1w1u:B
10 6ntz:A 367 75 0.0830 0.0599 0.2933 3.8 3beb:A, 3bec:A, 5j8x:A, 3mzd:A, 3mze:A, 3mzf:A, 1z6f:A
11 8h1l:B 423 45 0.0528 0.0331 0.3111 5.4 8h1l:C, 8h1n:A
12 6lla:B 363 39 0.0528 0.0386 0.3590 6.2 6lk2:A, 6lk2:B, 6lk2:C, 6lk2:D, 6lla:A, 6lla:C, 6lla:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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