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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PLVFLCSGCRRPLGDSLSWVATNCILLRCVSCNVSVDKEQKLSKREKENGCVLETLCCAGCSLNLGYVYRCTPKNLDYKR
DLFCLSVEAIESYVLG

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7sfz:A 100 100 0.9688 0.9300 0.9300 8.34e-59 7sfz:B, 7sfz:C, 7sfz:D, 7sfz:E, 7sfz:F, 7sfz:G
2 7sfz:H 84 96 0.8646 0.9881 0.8646 6.11e-50
3 5j6p:B 102 101 0.3542 0.3333 0.3366 2.43e-11 5hj0:A, 5hj0:B, 5hj0:C, 5j6p:A, 5j6p:C
4 6mqc:A 222 74 0.2083 0.0901 0.2703 1.1 6mqc:H
5 7x6v:A 1381 59 0.1562 0.0109 0.2542 2.6
6 6n16:H 219 51 0.1458 0.0639 0.2745 2.7 6n16:A, 6n16:K, 6n16:C
7 7x6s:A 1453 59 0.1562 0.0103 0.2542 2.9 5ltf:A, 5ltn:A, 5ltn:B, 5t2t:A
8 4ak2:A 286 21 0.0833 0.0280 0.3810 4.0
9 7r81:L2 90 24 0.1042 0.1111 0.4167 4.7 7olc:SK, 7old:SK, 8oo0:SK, 7z3n:SK, 7z3o:SK
10 3adp:A 310 17 0.0833 0.0258 0.4706 5.2
11 3hci:A 153 47 0.1354 0.0850 0.2766 5.9 3hci:B, 3hcj:A, 3hcj:B
12 4d0l:E 479 50 0.1146 0.0230 0.2200 7.4 5c4g:E, 4d0l:A, 4d0l:C, 4d0m:A, 4d0m:C, 4d0m:G, 4d0m:I, 4d0m:M, 4d0m:O, 4d0m:Q, 4d0m:S, 4d0m:W, 4d0m:Y, 4d0m:c, 4d0m:g, 5euq:E, 5fbl:A, 5fbq:A, 5fbr:A, 5fbv:A, 5fbw:A, 6gl3:A, 8q6f:A, 8q6g:A, 8q6h:A, 8vof:A, 4wae:A, 4wag:A
13 6tr8:A 136 53 0.1458 0.1029 0.2642 7.9
14 1wyh:A 72 12 0.0938 0.1250 0.7500 8.5
15 7ena:2 385 32 0.1250 0.0312 0.3750 8.6 8bvw:4, 8byq:4, 8ebs:E, 8ebt:E, 8ebu:E, 8ebv:E, 8ebw:E, 8ebx:E, 8eby:E, 7egb:2, 7egc:2, 7enc:2, 8gxq:HG, 8gxs:HG, 7lbm:a, 7nvr:6, 7nvw:6, 7nvx:6, 7nvy:6, 7nvz:6, 7nw0:6, 6o9l:6, 6o9m:6, 8wak:2, 8wal:2, 8wan:2, 8wao:2, 8wap:2, 8waq:2, 8war:2, 8was:2, 1z60:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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