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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PLTEQEIDELCDEWVPEPLIPPITEDMKHEPPVLESAAGPHTTVNGKDVVNFASANYLGLIGHEKLLESCTSALEKYGVG
SCGPRGFYGTIDVHLDCETRISKFLGTPDSILYSYGLSTMFSTIPCFCKKGDVIVADEGVHWGIQNGLQLSRSTIVYFKH
NDMESLRITLEKIMTKYKRSKNLRRYIVAEAVYQNSGQIAPLDEIVKLKEKYRFRVILDESNSFGVLGRSGRGLAEHHSV
PIEKIDVVTAAMGHALATEGGFCTGNARIIDYQRLSSSGYVFSASLPPYLASAAITAIDVIDQNPDMLVKLKQNVALLWK
GLSDIKGMSLTSNRESPIVFLKLEKSSGSAKDDLLLLEKMADRALKEDSLLVVSSKRSFLDKCRLPVGIKLYVSAGHSES
DLLKASESLKRLASELLL

The query sequence (length=418) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7yjk:A 445 418 1.0000 0.9393 1.0000 0.0 7yjk:E, 7yjn:A, 7yjo:A
2 7k0n:A 464 424 0.4474 0.4030 0.4410 4.04e-122 7cqi:S, 7cqk:S, 7k0i:A, 7k0i:D, 7k0j:A, 7k0k:A, 7k0l:A, 7k0n:E, 7k0o:A, 7k0o:E, 7k0p:A, 7k0p:E, 7k0q:A, 6m4n:A, 6m4n:E, 7yiy:A, 7yj2:A
3 8qog:B 500 339 0.3278 0.2740 0.4041 2.64e-80 8iaj:A, 8iaj:E, 8iak:A, 8iak:E, 8qof:F, 8qof:B
4 8guh:A 394 306 0.2177 0.2310 0.2974 2.24e-48 3a2b:A, 8h1q:A, 8h1y:A, 8h20:A, 8h21:A, 8h29:A, 8iyp:A, 8iyt:A
5 7u7h:A 423 312 0.2249 0.2222 0.3013 7.51e-45 7u7h:B
6 7v58:B 400 373 0.2608 0.2725 0.2922 1.39e-44 7v58:A, 7v5i:A, 7v5i:B, 7v5i:C, 7v5i:D
7 3tqx:A 396 389 0.2679 0.2828 0.2879 6.12e-44 3tqx:B
8 7poa:A 398 387 0.2823 0.2965 0.3049 1.03e-43 7poa:B, 7pob:A, 7pob:D, 7pob:B, 7pob:C, 7poc:A, 7poc:D, 7poc:B, 7poc:C
9 7yj1:B 502 308 0.2368 0.1972 0.3214 2.34e-43 7cqi:T, 7cqk:T, 7k0i:B, 7k0i:E, 7k0j:B, 7k0k:B, 7k0l:B, 7k0m:B, 7k0m:F, 7k0n:B, 7k0n:F, 7k0o:B, 7k0o:F, 7k0p:B, 7k0p:F, 7k0q:B, 6m4n:B, 6m4n:F, 6m4o:T, 7yiu:B, 7yiy:B, 7yj2:B
10 2x8u:A 399 300 0.2225 0.2331 0.3100 5.31e-43 2x8u:B
11 4bmk:A 398 319 0.2344 0.2462 0.3072 9.08e-42 4bmk:B, 2jg2:A, 2w8j:A, 2w8t:A, 2w8u:A, 2w8v:A, 2w8w:A, 2xbn:A
12 1fc4:A 401 396 0.2536 0.2643 0.2677 1.22e-39 1fc4:B
13 7bxq:A 399 378 0.2536 0.2657 0.2804 7.38e-38 7bxq:B, 7bxr:A, 7bxr:B, 7bxs:A, 7bxs:B
14 7yjm:B 471 384 0.2416 0.2144 0.2630 1.79e-37 7yjk:B, 7yjk:F, 7yjn:B, 7yjo:B
15 8c81:C 561 320 0.2010 0.1497 0.2625 3.74e-34 8c80:C, 8c82:C, 8c82:G, 8iaj:B, 8iaj:F, 8iak:B, 8iak:F, 8iam:B, 8iam:F, 8qof:C, 8qof:G, 8qog:C
16 6hrh:A 429 305 0.1986 0.1935 0.2721 5.81e-32 6hrh:B, 5qqq:B, 5qqq:A, 5qqr:B, 5qqr:A, 5qqs:B, 5qqs:A, 5qqt:B, 5qqt:A, 5qqu:B, 5qqu:A, 5qqv:B, 5qqv:A, 5qqw:B, 5qqw:A, 5qqx:B, 5qqx:A, 5qqy:B, 5qqy:A, 5qqz:B, 5qqz:A, 5qr0:B, 5qr0:A, 5qr1:B, 5qr1:A, 5qr2:B, 5qr2:A, 5qr3:B, 5qr3:A, 5qr4:B, 5qr4:A, 5qr5:B, 5qr5:A, 5qr6:B, 5qr6:A, 5qr7:B, 5qr7:A, 5qr8:B, 5qr8:A, 5qr9:B, 5qr9:A, 5qra:B, 5qra:A, 5qrb:B, 5qrb:A, 5qrc:B, 5qrc:A, 5qrd:B, 5qrd:A, 5qre:B, 5qre:A, 5qt3:B, 5qt3:A
17 2bwo:B 399 254 0.1699 0.1779 0.2795 2.81e-25 2bwn:A, 2bwn:B, 2bwn:D, 2bwn:E, 2bwo:A, 2bwo:D, 2bwo:E, 2bwp:A, 2bwp:B, 2bwp:D, 2bwp:E
18 5txr:A 479 281 0.1675 0.1461 0.2491 1.42e-24 8eim:A, 8eim:B, 5txr:B
19 1dj9:A 383 275 0.1770 0.1932 0.2691 2.99e-20 1dje:A, 8dle:A, 2g6w:A
20 2wk8:B 364 262 0.1555 0.1786 0.2481 2.89e-16
21 3hqt:B 386 259 0.1531 0.1658 0.2471 1.22e-15 3hqt:A, 3kki:A, 3kki:B, 2wk8:A, 2wk9:A, 2wk9:B, 2wka:A, 2wka:B
22 8xha:A 401 326 0.1818 0.1895 0.2331 8.38e-11 8i7u:C, 8i7u:F, 8i7u:A, 8i7u:E, 8i7u:B, 8i7u:D, 8xha:B, 8xhd:A, 8xhd:B, 8xhk:C, 8xhk:A, 8xhk:B, 8xhk:E, 8xhk:D, 8xhk:F
23 5ijg:B 403 50 0.0335 0.0347 0.2800 0.18 5ijg:A
24 8erb:K 429 151 0.0957 0.0932 0.2649 0.45 8erb:A, 8erb:C, 8erb:B, 8erb:D, 8erb:G, 8erb:H, 8erb:F, 8erb:P, 8erb:I, 8erb:J, 8erb:M, 8erb:E, 8erb:Q, 8erb:N, 8erb:L, 8erj:A, 8erj:B, 8erj:C, 8erj:D, 8erj:E, 8erj:F, 8erj:H, 8erj:G
25 8ht4:B 390 188 0.1220 0.1308 0.2713 0.47 8ht4:A
26 3j79:Q 189 69 0.0431 0.0952 0.2609 1.7 3jbn:AQ, 3jbo:AQ, 3jbp:AQ, 8tpu:AQ, 5umd:Q
27 7qrc:B 61 55 0.0478 0.3279 0.3636 1.7 7qrc:A
28 2e7i:A 344 137 0.0622 0.0756 0.1898 1.8 2e7i:B, 2e7j:A, 2e7j:B
29 7oik:A 4426 47 0.0359 0.0034 0.3191 2.1 7oim:A, 6tax:A, 6tay:A
30 1xvt:A 402 42 0.0311 0.0323 0.3095 3.1 1xa4:B, 1xvu:A, 1xvv:A
31 8h2w:B 984 102 0.0598 0.0254 0.2451 4.5 8h2w:A, 5nz8:B
32 5vmo:A 115 69 0.0407 0.1478 0.2464 4.7
33 5nz8:A 884 102 0.0598 0.0283 0.2451 5.7
34 7lt5:B 576 184 0.0957 0.0694 0.2174 6.0 8cxs:A, 8cxs:B, 8cxs:C, 8cxt:A, 8cxt:B, 8cxt:C, 8cxu:A, 8cxu:B, 8cxu:C, 8cxv:A, 8cxv:B, 8cxv:C, 8cxw:A, 8cxw:B, 8cxw:C, 8cxx:A, 8cxx:B, 8cxx:C, 8cxy:A, 8cxy:B, 8cxy:C, 8cxz:A, 8cxz:B, 8cxz:C, 8cy0:A, 8cy0:B, 8cy0:C, 8cy1:A, 8cy1:B, 8cy1:C, 8cy2:A, 8cy2:B, 8cy2:C, 8cy3:A, 8cy3:B, 8cy3:C, 8cy4:A, 8cy4:B, 8cy4:C, 8cy5:A, 8cy5:B, 8cy5:C, 8fs1:A, 8fs1:B, 8fs1:C, 8fs2:A, 8fs2:B, 8fs2:C, 7lni:A, 7lni:B, 7lni:C, 7lnj:A, 7lnj:B, 7lnj:C, 7lt5:A, 7lt5:C, 7rfk:A, 7rfk:B, 7rfk:C, 7rfl:A, 7rfl:B, 7rfl:C, 7rfm:A, 7rfm:B, 7rfm:C, 7rfn:A, 7rfn:B, 7rfn:C, 8vpg:A, 8vpg:B, 8vpg:C, 8vph:A, 8vph:B, 8vph:C, 8vpi:A, 8vpi:B, 8vpi:C
35 8btk:BI 213 55 0.0407 0.0798 0.3091 7.1 7a01:L2, 7a01:X2, 8a3d:p, 5aj0:AI, 8b5l:I, 8b6c:I, 9bdl:AL10, 9bdn:AL10, 9bdp:AL10, 7bhp:LI, 8bhf:r3, 8bpo:I2, 7cpu:LI, 7cpv:LI, 4d5y:I, 4d67:I, 6d90:I, 6d9j:I, 9f1b:BI, 9f1c:BI, 9f1d:BI, 7f5s:LI, 6frk:I, 6ftg:I, 6fti:I, 6ftj:I, 8g5y:LI, 8g5z:LI, 8g60:LI, 8g61:LI, 8g6j:LI, 8glp:LI, 6gz3:AI, 6gz4:AI, 6gz5:AI, 6hcf:I3, 6hcj:I3, 6hcm:I3, 6hcq:I3, 8ifd:2D, 8ife:2D, 6ip5:2D, 6ip6:2D, 6ip8:2D, 3j7o:I, 3j7p:I, 3j7q:I, 3j7r:I, 3j92:I, 3jag:I, 3jah:I, 3jai:I, 3jaj:I, 3jan:I, 8jdj:O, 8jdk:O, 8jdl:O, 8jdm:O, 8k2c:LI, 5lks:LI, 7ls1:D1, 7ls2:D1, 5lzs:I, 5lzt:I, 5lzu:I, 5lzv:I, 5lzw:I, 5lzx:I, 5lzy:I, 5lzz:I, 7mdz:I, 6mtb:I, 6mtc:I, 6mtd:I, 6mte:I, 7nfx:I, 7nwg:I3, 7nwh:I, 7nwi:I, 7o7y:BI, 7o7z:BI, 7o80:BI, 7o81:BI, 7obr:I, 8ohd:LI, 8oj0:LI, 8oj5:LI, 8oj8:LI, 6ole:K, 6olf:K, 6olg:AI, 6oli:K, 6olz:AI, 6om0:K, 6om7:K, 7oya:I1, 7oyb:I1, 7oyc:I1, 7oyd:I, 8p2k:BI, 6p5i:AI, 6p5j:AI, 6p5k:AI, 6p5n:AI, 8q7z:BI, 8q87:BI, 8qfd:I, 7qgg:K, 8qoi:LI, 7qvp:LI, 7qvp:MI, 7qwq:I, 7qwr:I, 7qws:I, 6qzp:LI, 6r5q:I, 6r6g:I, 6r6p:I, 6r7q:I, 8rjb:I, 8rjc:I, 8rjd:I, 8scb:I, 6sgc:I2, 6swa:I, 5t2c:p, 6t59:I3, 7tm3:I, 7toq:AL10, 7tor:AL10, 7tut:I, 7ucj:I, 7uck:I, 4ug0:LI, 4ujc:BI, 4ujd:AI, 4uje:CI, 4v5z:Bh, 4v6x:CI, 6xa1:LI, 7xnx:LI, 7xny:LI, 8xsx:LI, 8xsy:LI, 8xsz:LI, 6y0g:LI, 8y0w:LI, 8y0x:LI, 6y2l:LI, 6y57:LI, 6y6x:LI, 8yoo:LI, 8yop:LI, 6z6l:LI, 6z6m:LI, 6z6n:LI, 7zjw:LL, 7zjx:LL, 6zm7:LI, 6zme:LI, 6zmi:LI, 6zmo:LI, 6zvk:L2, 6zvk:X2
36 6eko:A 312 75 0.0359 0.0481 0.2000 7.3 6eko:B
37 5kxb:A 238 105 0.0718 0.1261 0.2857 8.9 5kxb:B, 5kxb:C, 5kxb:D, 5kxc:A, 5kxc:B, 5kxc:C, 5kxc:D, 5kxd:A, 5kxd:B, 5kxd:C, 5kxd:D, 5kxe:A, 5kxe:B, 5kxe:C, 5kxe:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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