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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PLTALSPRRFVVLLIFSLYSLVNAFQWIQYSIISNVFEGFYGVTLLHIDWLSMVYMLAYVPLIFPATWLLDTRGLRLTAL
LGSGLNCLGAWIKCGSVQQHLFWVTMLGQCLCSVAQVFILGLPSRIASVWFGPKEVSTACATAVLGNQLGTAVGFLLPPV
LVPNTQNDTNLLACNISTMFYGTSAVATLLFILTAIAFKEKPRYPPSQAQAALQDSPPEEYSYKKSIRNLFKNIPFVLLL
ITYGIMTGAFYSVSTLLNQMILTYYEGEEVNAGRIGLTLVVAGMVGSILCGLWLDYTKTYKQTTLIVYILSFIGMVIFTF
TLDLRYIIIVFVTGGVLGFFMTGYLPLGFEFAVEITYPESEGTSSGLLNASAQIFGILFTLAQGKLTSDYGPKAGNIFLC
VWMFIGIILTALIKSDLR

The query sequence (length=418) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8uc0:A 422 418 1.0000 0.9905 1.0000 0.0 8qct:A, 8r8t:A, 8ubw:A, 8ubx:A, 8uby:A, 8ubz:A
2 8qd0:A 422 414 0.6316 0.6256 0.6377 0.0 8qcz:A, 8vzn:A, 8vzo:A
3 2wyo:A 520 117 0.0861 0.0692 0.3077 0.022
4 6hpd:A 955 91 0.0526 0.0230 0.2418 0.48
5 3bb0:A 576 53 0.0455 0.0330 0.3585 1.1 1vnc:A, 1vne:A, 1vnf:A, 1vng:A, 1vnh:A, 1vni:A, 1vns:A
6 2wyo:C 496 63 0.0550 0.0464 0.3651 1.6 2wyo:B, 2wyo:D
7 5z16:B 739 52 0.0335 0.0189 0.2692 2.9 5z16:A
8 7w78:B 344 42 0.0407 0.0494 0.4048 4.3 7w7a:B, 7w7a:D, 7w7a:F, 7w7a:H, 7w7b:B, 7w7b:D, 7w7b:F, 7w7b:H, 7w7d:B, 7w7d:D, 7w7d:F, 7w7d:H
9 5uao:A 519 49 0.0455 0.0366 0.3878 7.3 5uao:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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