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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PLSVAVVGAGPRGTSVLERLCASAPELLAPGVRLTVHVVDPAPPGPGRVWRTAQSEDLLMNTVASQVTLFTDESVNCSGP
ILAGPSLHEWADGAIGPDDYPTRALYGRYLEWVFARTLRHAPPSVRVETHRARAVRLDDAADGRQHLALDNGRTLTGLSA
VVLAQGHLPVRPSAAVLRDTEHADRHALRHIPPANPADVDLTVISPGEPVLLRGLGLNFFDHMALLTTGRGGTYVREDGV
LRYVPSGREPRVYAGSRRGLPYQARGDNAKGPYGRHLPEVLTPEAVSAFRKRADSGEAPDFLRDIWPLVAKEVETVYYTA
LVRHPDFAPRYLSLPYGDPQEAELLAEFGVDADARWDWERVSRPYAQREFAHRGEWRQWLLGYLRADAAEALRGNVDGPL
KAALDVLRDLRNELRLVVDHRGLRGDSRRDHLDRWYTPLNAFLSIGPPRRRIEELTALLEAGVVEVLGPRLEVTREDGAW
LARSPDVPGSAVRVTTLIEARLPEPDLGQTADALLAHLRETGQCRAHVVDGYTTGGIDVSARPYHLVDREGVAHPRRFAF
GVPTEGVHWVTAAGARPGVDSVTLSDADAVARAVLRVAGQ

The query sequence (length=600) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8cp2:A 600 600 1.0000 1.0000 1.0000 0.0 8cp2:B, 8cp5:A, 8cp5:B
2 7vcp:A 490 128 0.0583 0.0714 0.2734 0.47
3 8e14:A 269 46 0.0250 0.0558 0.3261 0.51 1a5v:A, 1a5w:A, 1a5x:A, 8e14:E, 8e14:C, 8e14:G, 5ejk:A, 5ejk:E, 5ejk:C, 5ejk:H, 5ejk:D, 5ejk:G, 5ejk:B, 5ejk:F, 7jn3:A, 7jn3:G, 7jn3:C, 7jn3:E, 7ku7:A, 7ku7:G, 7ku7:C, 7ku7:E, 7kui:A, 7kui:G, 7kui:C, 7kui:E, 3o4n:A, 3o4n:B, 1vsd:A, 1vsf:A, 1vsh:A, 1vsi:A, 1vsj:A
4 7osk:A 360 53 0.0250 0.0417 0.2830 0.88 7osk:B
5 3h9a:A 225 53 0.0233 0.0622 0.2642 4.5 3h7j:A, 3h7j:B, 3h7y:A, 3h7y:B, 3h9a:B
6 3r6k:A 301 103 0.0400 0.0797 0.2330 5.6
7 2qnx:A 334 50 0.0283 0.0509 0.3400 9.0 2qnx:B, 2qny:A, 2qny:B, 2qnz:A, 2qnz:B, 2qo0:A, 2qo0:B, 2qo1:A, 2qo1:B, 2qx1:A, 2qx1:B, 1u6s:A, 1u6s:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218