Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEA
AAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFS
IPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY

The query sequence (length=216) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fog:A 218 215 0.9954 0.9862 1.0000 1.51e-161 6fog:C, 6fog:G, 6fog:E, 6fog:F, 6fog:H, 6fog:D, 6fog:B, 6foh:A, 6foh:B, 1saw:A, 1saw:B
2 6sbi:A 216 213 0.8796 0.8796 0.8920 1.67e-145 6sbi:B, 6sbi:C, 6sbi:D, 6sbj:A, 6sbj:B, 6sbj:C, 6sbj:D
3 1nr9:A 211 201 0.4120 0.4218 0.4428 2.03e-52 1nr9:B, 1nr9:C, 1nr9:D
4 3v77:A 224 190 0.3519 0.3393 0.4000 1.92e-49 3v77:B, 3v77:C, 3v77:D, 3v77:E, 3v77:F
5 1nkq:A 247 241 0.4028 0.3522 0.3610 1.27e-46 1nkq:B, 1nkq:C, 1nkq:D, 1nkq:E, 1nkq:F
6 6j5y:A 233 207 0.3565 0.3305 0.3720 1.07e-43
7 3qdf:A 252 202 0.3565 0.3056 0.3812 5.68e-41
8 1gtt:A 421 178 0.3611 0.1853 0.4382 8.22e-41 1gtt:B, 1gtt:C, 1gtt:D, 1i7o:A, 1i7o:B, 1i7o:C, 1i7o:D
9 1gtt:A 421 201 0.2269 0.1164 0.2438 4.78e-09 1gtt:B, 1gtt:C, 1gtt:D, 1i7o:A, 1i7o:B, 1i7o:C, 1i7o:D
10 8sky:B 303 184 0.3657 0.2607 0.4293 7.93e-40 8sky:A, 8sut:A, 8sut:B, 8suu:A, 8suu:B
11 8gsr:A 290 211 0.3611 0.2690 0.3697 3.14e-38 8gsr:B, 8gsr:C, 8gsr:D, 8gst:A, 8gst:B, 8gst:C, 8gst:D
12 6iym:A 277 211 0.3565 0.2780 0.3649 3.06e-37 6iym:B
13 6jvw:B 264 206 0.3287 0.2689 0.3447 1.96e-32 6jvw:A
14 6j5x:A 280 183 0.3148 0.2429 0.3716 1.31e-30 6j5x:B
15 6v77:B 279 181 0.2917 0.2258 0.3481 8.04e-29 6v77:A
16 4dbh:A 269 200 0.3148 0.2528 0.3400 8.87e-27 4dbf:A, 4dbf:B, 4dbh:B
17 3r6o:A 265 219 0.3194 0.2604 0.3151 2.75e-22
18 8tdi:G 386 73 0.1019 0.0570 0.3014 5.4 8tdi:L, 8tdi:J, 8tdi:A, 8tdi:C, 8tdi:D, 8tdi:E, 8tdi:F, 8tdi:H, 8tdi:I, 8tdi:B, 8tdi:K
19 6h0n:A 377 139 0.1667 0.0955 0.2590 9.4 6h0n:B, 6h0p:A, 6h0p:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218