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BioLiP
>protein
PLSRFWEWGKNIVCVGRNYADHVKEMRSTVLSEPVLFLKPSTAYAPEGSPVLMPAYCRNLHHEVELGVLLGKRGEAIPEA
AAMDYVAGYALCLDMTARDVQEECKKKGLPWTLAKSFTSSCPVSAFVPKEKIPDPHALRLWLKVNGELRQEGKTSSMIFS
IPYIISYVSKIITLEEGDLILTGTPKGVGPIKENDEIEAGIDGVVSMRFKVKRS

The query sequence (length=214) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6sbi:A 216 214 1.0000 0.9907 1.0000 2.95e-160 6sbi:B, 6sbi:C, 6sbi:D, 6sbj:A, 6sbj:B, 6sbj:C, 6sbj:D
2 6fog:A 218 213 0.8879 0.8716 0.8920 1.91e-145 6fog:C, 6fog:G, 6fog:E, 6fog:F, 6fog:H, 6fog:D, 6fog:B, 6foh:A, 6foh:B, 1saw:A, 1saw:B
3 1nr9:A 211 193 0.4159 0.4218 0.4611 2.21e-53 1nr9:B, 1nr9:C, 1nr9:D
4 3v77:A 224 190 0.3645 0.3482 0.4105 3.99e-49 3v77:B, 3v77:C, 3v77:D, 3v77:E, 3v77:F
5 1nkq:A 247 239 0.4065 0.3522 0.3640 3.73e-47 1nkq:B, 1nkq:C, 1nkq:D, 1nkq:E, 1nkq:F
6 6j5y:A 233 207 0.3598 0.3305 0.3720 6.58e-44
7 1gtt:A 421 178 0.3598 0.1829 0.4326 6.57e-41 1gtt:B, 1gtt:C, 1gtt:D, 1i7o:A, 1i7o:B, 1i7o:C, 1i7o:D
8 1gtt:A 421 169 0.2103 0.1069 0.2663 2.33e-09 1gtt:B, 1gtt:C, 1gtt:D, 1i7o:A, 1i7o:B, 1i7o:C, 1i7o:D
9 8sky:B 303 213 0.3832 0.2706 0.3850 1.70e-40 8sky:A, 8sut:A, 8sut:B, 8suu:A, 8suu:B
10 3qdf:A 252 202 0.3458 0.2937 0.3663 8.98e-40
11 6iym:A 277 211 0.3505 0.2708 0.3555 1.61e-37 6iym:B
12 8gsr:A 290 209 0.3645 0.2690 0.3732 3.14e-37 8gsr:B, 8gsr:C, 8gsr:D, 8gst:A, 8gst:B, 8gst:C, 8gst:D
13 6jvw:B 264 206 0.3224 0.2614 0.3350 8.35e-31 6jvw:A
14 6j5x:A 280 183 0.3224 0.2464 0.3770 1.43e-30 6j5x:B
15 6v77:B 279 181 0.3037 0.2330 0.3591 3.37e-29 6v77:A
16 4dbh:A 269 200 0.2897 0.2305 0.3100 8.48e-24 4dbf:A, 4dbf:B, 4dbh:B
17 3r6o:A 265 214 0.3178 0.2566 0.3178 1.21e-23
18 3bqb:X 291 159 0.1916 0.1409 0.2579 0.004 3bqb:A, 3bqb:Z, 3bqb:Y, 2q1a:X, 2q1c:X, 2q1d:X
19 1ei6:A 404 116 0.1495 0.0792 0.2759 1.3 1ei6:B, 1ei6:C, 1ei6:D
20 8z98:B 647 155 0.1776 0.0587 0.2452 3.1 8z9q:B
21 7pub:Fi 469 40 0.0607 0.0277 0.3250 7.2
22 6yxx:AN 193 47 0.0794 0.0881 0.3617 8.9 7aoi:AN, 6hiv:AN, 6hix:AN, 6yxy:AN

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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