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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PLRLDRLRDFVSALGELLDRHPDEESVLREGRSLLGELVRHDDWLPEEFAQPDPERYQQYLLHADSRQRFSVVSFVWGPG
QTTPVHDHRVWGLIGMLRGAEDAQSFELGAEGLRPIGDPVRLSPGQVEAVSPRIGDIHRVFNASPDQPSISIHVYGANIG
AVRRAVYLPDGSEKPFISGYSNQFLPNIWDQSKE

The query sequence (length=194) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kov:B 194 194 1.0000 1.0000 1.0000 1.03e-140 7kov:A, 7kov:C, 7kov:D, 6xb9:A, 6xb9:B, 6xb9:C, 6xb9:D, 6xb9:E, 6xb9:F, 6xb9:G, 6xb9:H, 6xb9:I, 6xb9:J, 6xb9:K, 6xb9:L
2 4wvz:D 203 194 0.6959 0.6650 0.6959 3.22e-92 4tlf:A, 4tlf:B, 4tlf:C, 4tlf:D, 3uss:A, 3uss:B, 4wvz:A, 4wvz:B, 4wvz:C
3 4qma:A 192 192 0.6546 0.6615 0.6615 6.51e-86
4 6bgf:A 188 117 0.1598 0.1649 0.2650 1.77e-05 2atf:A, 2b5h:A, 6bgm:A, 6bpr:A, 6bps:A, 6bpt:A, 6bpu:A, 6bpv:A, 6bpw:A, 6bpx:A, 6cdh:A, 6cdn:A, 6e87:A, 5efu:A, 3eln:A, 5ezw:A, 2gh2:A, 5i0r:A, 5i0s:A, 5i0t:A, 5i0u:A, 2ic1:A, 4ieo:A, 4iep:A, 4ieq:A, 4ier:A, 4ies:A, 4iet:A, 4ieu:A, 4iev:A, 4iew:A, 4iex:A, 4iey:A, 4iez:A, 4jtn:A, 4jto:A, 4kwj:A, 4kwk:A, 4kwl:A, 6n42:A, 6n43:A, 4pix:A, 4piy:A, 4piz:A, 4pjy:A, 6u1m:A, 6u4l:A, 6u4s:A, 6u4v:A, 4ubg:A, 4ubh:A, 8vl9:D, 8vlb:D, 4xet:A, 4xez:A, 4xf0:A, 4xf1:A, 4xf3:A, 4xf4:A, 4xf9:A, 4xfa:A, 4xfb:A, 4xfc:A, 4xff:A, 4xfg:A, 4xfh:A, 4xfi:A, 4ysf:A, 4yyo:A, 4z82:A
5 1lr5:D 160 66 0.0979 0.1187 0.2879 0.040 1lr5:C, 1lr5:B, 1lr5:A, 1lrh:D, 1lrh:C, 1lrh:B, 1lrh:A
6 4ka7:A 695 115 0.1546 0.0432 0.2609 0.79 4ka8:A, 4put:A
7 7chi:A 220 145 0.1804 0.1591 0.2414 1.4
8 8hey:D 1270 64 0.0825 0.0126 0.2500 1.5
9 7cxz:A 245 69 0.0928 0.0735 0.2609 1.7
10 7eto:a 1297 64 0.0825 0.0123 0.2500 1.7 7et3:a, 7etj:a
11 7chj:B 226 107 0.1392 0.1195 0.2523 2.5 7chj:A, 6s0p:A, 6s7e:A
12 1odi:A 234 88 0.1392 0.1154 0.3068 3.1 1odi:B, 1odi:C, 1odi:D, 1odi:E, 1odi:F, 1odj:A, 1odj:B, 1odj:C, 1odj:D, 1odj:E, 1odj:F, 1odl:A, 1odl:F, 1odl:B, 1odl:C, 1odl:D, 1odl:E
13 8tzh:A 1485 41 0.0979 0.0128 0.4634 3.4 3d6t:B
14 8u8b:A 1712 41 0.0979 0.0111 0.4634 3.5 8u7l:B, 8u7l:A, 8u8a:B, 8u8a:C, 8u8b:B, 2zej:A
15 8fo9:F 2289 41 0.0979 0.0083 0.4634 3.5 9c61:A, 9c61:B, 8fo2:E, 8fo7:C, 8fo8:C, 8fo8:E, 8fo9:E, 7lht:A, 7lht:B, 7lhw:A, 7li3:A, 7li4:A, 6oje:A, 6oje:B, 6ojf:A, 6ojf:B, 7thy:A, 7thz:A, 6xaf:A, 6xaf:B, 2zej:B
16 8tzf:A 1589 41 0.0979 0.0120 0.4634 3.6
17 8tyq:A 957 41 0.0979 0.0199 0.4634 3.9 8tze:A
18 8tzb:A 920 41 0.0979 0.0207 0.4634 4.1
19 8txz:A 858 41 0.0979 0.0221 0.4634 4.2
20 8smc:C 1084 41 0.0979 0.0175 0.4634 4.3
21 8fo9:A 1173 41 0.0979 0.0162 0.4634 4.3 8fo9:C
22 6vno:A 1084 41 0.0979 0.0175 0.4634 4.5 6vp6:A
23 8u7h:C 1111 41 0.0979 0.0171 0.4634 4.5
24 8xku:D 805 42 0.0979 0.0236 0.4524 6.6
25 8fit:A 229 44 0.0722 0.0611 0.3182 7.1 8fit:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218