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BioLiP
>protein
PLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQALLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ds9:B 98 73 0.9863 0.7347 0.9863 2.40e-48 5ds9:A, 5dtd:A, 5dtd:B, 5e3l:A, 5e3l:B, 5e3m:A, 5e3m:B, 5e3n:A, 5e3n:B, 5e3o:A, 5e3o:B, 1fip:A, 1fip:B, 4ihv:A, 4ihv:B, 4ihw:A, 4ihw:B, 4ihx:A, 4ihx:B, 4ihy:A, 4ihy:B, 3iv5:A, 3iv5:B, 3jr9:A, 3jr9:B, 3jra:A, 3jra:B, 3jrb:A, 3jrb:B, 3jrc:A, 3jrc:B, 3jrd:A, 3jrd:B, 3jre:A, 3jre:B, 3jrf:A, 3jrf:B, 3jrg:A, 3jrg:B, 3jrh:A, 3jrh:B, 3jri:A, 3jri:B, 6p0s:A, 6p0s:B, 6p0t:B, 6p0t:A, 6p0u:A, 6p0u:B
2 1ojl:E 285 40 0.2192 0.0561 0.4000 0.013
3 8jfk:B 1033 37 0.2055 0.0145 0.4054 4.5 8jfk:N, 8jfk:J, 8jfk:F, 8jfl:B, 8jfl:N, 8jfl:F, 8jfl:J, 8xya:B
4 1wow:A 245 50 0.2055 0.0612 0.3000 8.6 1wov:A, 1wov:B, 1wow:B, 1wox:A, 1wox:B
5 8t56:E 36 17 0.1096 0.2222 0.4706 8.8 8t56:I, 8t56:D, 8t56:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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