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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQA
YVHHQALLDVKNIAHQNKF

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3c5k:A 108 99 1.0000 0.9167 1.0000 2.57e-70 5b8d:A, 6ce6:A, 6ce8:A, 6cea:A, 6cec:A, 6ced:A, 6cee:A, 6cef:A, 8g43:A, 8g44:A, 8g45:A, 3gv4:A, 5kh3:A, 5kh7:A, 5kh9:A, 3phd:A, 3phd:B, 3phd:C, 3phd:D, 5wbn:A, 5wpb:A, 7zyu:A
2 5g0f:A 110 99 0.6061 0.5455 0.6061 6.98e-43
3 6kcz:A 99 89 0.2626 0.2626 0.2921 5.08e-05
4 2uzg:A 95 83 0.2828 0.2947 0.3373 7.40e-05
5 2i50:A 122 54 0.2121 0.1721 0.3889 0.005
6 2l80:A 114 80 0.2020 0.1754 0.2500 0.009
7 4wa6:D 415 78 0.2020 0.0482 0.2564 0.010 4w4u:D
8 3mhs:A 455 78 0.2020 0.0440 0.2564 0.013 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
9 4fjc:E 434 79 0.2020 0.0461 0.2532 0.014 3m99:A, 3mhh:A
10 3ihp:B 681 48 0.1414 0.0206 0.2917 0.13 6dxh:A, 6dxt:A, 6dxt:B, 2g43:A, 2g43:B, 2g45:A, 2g45:D, 3ihp:A, 7ms5:A, 7ms5:B, 7ms6:A, 7ms7:A, 7ms7:B, 6nft:A, 6nft:B, 6p9g:A
11 7oik:A 4426 27 0.1313 0.0029 0.4815 0.30 7oim:A, 6tax:A, 6tay:A
12 4hsr:B 535 42 0.1515 0.0280 0.3571 1.7 4hst:B
13 6dgd:A 704 40 0.1414 0.0199 0.3500 3.1 6dgd:B, 4nl4:H
14 2ida:A 102 67 0.1919 0.1863 0.2836 3.7
15 7dn3:B 1044 16 0.0707 0.0067 0.4375 9.2 7du2:B
16 8ity:B 1105 16 0.0707 0.0063 0.4375 9.2 7a6h:B, 7ae1:B, 7ae3:B, 7aea:B, 7d58:B, 7d59:B, 7fji:B, 7fjj:B, 8iue:B, 8iuh:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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