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BioLiP
>protein
PLKNLVLDIDYNDAVVVIHTSPGAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILELFD

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1xxa:C 73 73 1.0000 1.0000 1.0000 2.15e-47 1xxa:A, 1xxa:B, 1xxa:D, 1xxa:F, 1xxa:E, 1xxb:A, 1xxb:C, 1xxb:B, 1xxb:D, 1xxb:E, 1xxb:F
2 6wjp:A 80 65 0.3425 0.3125 0.3846 1.34e-10 5jvo:A, 5jvo:B, 6wjo:A, 6wjo:B, 6wjp:B
3 2p5m:A 82 78 0.4247 0.3780 0.3974 5.24e-06 2p5m:B, 2p5m:C
4 3fhz:D 166 68 0.3151 0.1386 0.3382 1.39e-04 3cag:A, 3cag:C, 3cag:E, 3cag:B, 3cag:D, 3cag:F, 3ere:D, 3fhz:C, 3fhz:E, 3fhz:B, 3fhz:F, 3fhz:A, 3laj:C, 3laj:E, 3laj:B, 3laj:F, 3laj:A, 3laj:D, 3lap:C, 3lap:E, 3lap:B, 3lap:F, 3lap:A, 3lap:D, 2zfz:A, 2zfz:C, 2zfz:F, 2zfz:B, 2zfz:D, 2zfz:E
5 1b4b:A 71 71 0.3562 0.3662 0.3662 5.23e-04 1b4b:C, 1b4b:B
6 5ur2:B 959 65 0.2466 0.0188 0.2769 0.45 5ur2:A, 5ur2:C, 5ur2:D
7 8i9r:Ch 71 45 0.1644 0.1690 0.2667 1.5 8i9t:Ch
8 8haw:A 479 76 0.2466 0.0376 0.2368 3.4 8hav:A, 8haw:B
9 5g1n:E 307 20 0.1370 0.0326 0.5000 3.7 5g1n:A, 5g1n:B, 5g1n:C, 5g1n:D, 5g1n:F, 5g1p:A, 5g1p:B, 5g1p:C, 5g1p:D, 5g1p:E, 5g1p:F
10 8pn9:G 411 50 0.2192 0.0389 0.3200 5.5 6s7o:G, 6s7t:G
11 5u0l:A 488 27 0.1233 0.0184 0.3333 5.7 5u0m:A, 5u0m:B
12 4zi2:A 185 33 0.1644 0.0649 0.3636 6.0 3bh6:A, 3bh7:A, 1fzq:A, 4goj:A, 4goj:B, 7ok7:A, 7ok7:B, 7ok7:C, 7ok7:D, 7ok7:E, 7ok7:F, 4zi2:B, 4zi3:A, 4zi3:B
13 3rj8:A 473 32 0.1781 0.0275 0.4062 6.3 3rja:A
14 8ioo:A 327 24 0.1507 0.0336 0.4583 6.5 8ioo:B, 8ioo:C
15 3efv:A 459 27 0.1370 0.0218 0.3704 6.5 3efv:B, 3efv:C, 3efv:D
16 5de3:A 166 40 0.1918 0.0843 0.3500 7.2 5di3:A
17 5vcs:B 323 27 0.1918 0.0433 0.5185 7.7
18 5vcm:B 358 27 0.1918 0.0391 0.5185 7.7 5vcm:A, 5vcs:A
19 4gae:A 416 16 0.0959 0.0168 0.4375 9.3 3au8:A, 3au8:B, 3au9:A, 3au9:B, 3aua:A, 3aua:B, 4gae:B, 5jaz:A, 5jaz:B, 5jbi:A, 5jbi:B, 5jc1:A, 5jc1:B, 5jmp:A, 5jmp:B, 5jmw:A, 5jmw:B, 5jnl:A, 5jnl:B, 8jnv:A, 8jnv:B, 8jnw:A, 8jnw:B, 5jo0:A, 5jo0:B, 4kp7:A, 4kp7:B, 3wqq:A, 3wqq:B, 3wqr:A, 3wqr:B, 3wqs:B, 4y67:A, 4y67:B, 4y6p:A, 4y6p:B, 4y6r:A, 4y6r:B, 4y6s:A, 4y6s:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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