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BioLiP
>protein
PLKDRRLLEVKLGELPSWILMRDFTPSGIAGAFQRGYYRYYNKYVNVKKGSVAGLSMVLAAYVVFNYCRSYKELKHERLR
KYH

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6j54:f 87 83 1.0000 0.9540 1.0000 6.24e-58 6zbb:f, 6zmr:f, 6zpo:f, 6zqm:f, 6zqn:f
2 6ofc:B 669 56 0.2048 0.0254 0.3036 0.75 3dla:A, 3dla:D, 3dla:C, 6ofc:A, 6ofc:D, 6ofc:C, 3seq:A, 3seq:B, 3sez:A, 3sez:B, 3syt:A, 3syt:B, 3syt:C, 3szg:A, 3szg:D, 3szg:C
3 3seq:D 650 56 0.2048 0.0262 0.3036 0.86 3dla:B, 3seq:C, 3sez:D, 3sez:C, 3syt:D, 3szg:B
4 6td5:I 219 38 0.1566 0.0594 0.3421 1.2 6td5:i
5 7dzz:B 268 18 0.1084 0.0336 0.5000 2.8 7dt0:A, 7dt0:B, 7dt0:C, 7dt0:D, 7dt0:E, 7dt0:F, 7dt0:G, 7dzz:A, 7e00:A, 7e00:B, 7e01:A, 7e06:A, 7e06:B, 7e07:A, 7e07:B, 7e08:A, 7e09:A, 8h7v:A, 8h7v:B, 8h7y:A, 8h7y:B, 8h81:A, 8h85:A
6 7dt0:H 241 18 0.1084 0.0373 0.5000 4.2
7 3e80:C 747 30 0.1325 0.0147 0.3667 5.6 3e7j:A, 3e7j:B, 3e80:A, 3e80:B, 2fuq:B, 2fuq:A, 2fut:A, 2fut:B
8 6wq2:A 154 62 0.2169 0.1169 0.2903 6.8 6wq2:B, 6wq2:C, 6wq2:D, 6wq2:E, 6wq2:F, 6wq2:G, 6wq2:H, 6wq2:I, 6wq2:J, 6wq2:K, 6wq2:L, 6wq2:M, 6wq2:N, 6wq2:P, 6wq2:R, 6wq2:T

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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