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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PLHKYPVWLWKRLQLREGICSRLPGHYLRSLEEERTPTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQRGLWG
GEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLIDEAYGLDFYILKTPKEDLCSKFGMDL
KRGMLLRLARQDPQLHPEDPERRAAIYDKYKEFAIPEEEAEWVGLTLEEAIEKQRLLEEKDPVPLFKIYVAELIQQLQQQ
ALS

The query sequence (length=243) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8any:X 244 243 1.0000 0.9959 1.0000 1.64e-180 7a5f:X3, 7a5g:X3, 7a5h:X, 7a5i:X3, 7a5j:X, 7a5k:X3, 6i9r:X, 3j7y:X, 3j9m:X, 8k2a:Lb, 8k2b:Lb, 7l08:X, 7l20:X, 6nu2:X, 6nu3:X, 7o9k:X, 7o9m:X, 7odr:X, 7ods:X, 7odt:X, 7of0:X, 7of2:X, 7of3:X, 7of4:X, 7of5:X, 7of6:X, 7of7:X, 7og4:XX, 7oi6:X, 7oi7:X, 7oi8:X, 7oi9:X, 7oia:X, 7oib:X, 7oic:X, 7oid:X, 7oie:X, 8oir:BE, 8oit:BE, 5ool:X, 5oom:X, 7pd3:X, 8pk0:X, 7po4:X, 7qh6:X, 7qh7:X, 7qi4:X, 7qi5:X, 7qi6:X, 8qsj:X, 8qu1:X, 8qu5:X, 6vlz:X, 6vmi:X, 8xt0:Lb, 8xt1:Lb, 8xt2:Lb, 8xt3:Lb, 6zm5:X, 6zm6:X, 6zs9:XX, 6zsa:XX, 6zsb:XX, 6zsc:XX, 6zsd:XX, 6zse:XX, 6zsg:XX
2 5aj4:B1 244 232 0.8066 0.8033 0.8448 1.16e-145 4ce4:1, 6gaw:B1, 6gb2:B1, 7nqh:B1, 7nql:B1, 7nsh:B1, 7nsi:B1, 7nsj:B1, 8oin:BE, 8oiq:BE, 4v19:1, 6ydp:B1, 6ydw:B1
3 6xyw:Ax 99 96 0.1235 0.3030 0.3125 2.79e-09
4 6z1p:AB 264 102 0.1358 0.1250 0.3235 2.91e-07
5 5mrc:S 185 75 0.0988 0.1297 0.3200 3.90e-05 3j6b:S, 5mre:S, 5mrf:S
6 8a22:Av 129 85 0.1070 0.2016 0.3059 8.19e-05 8apn:Av, 8apo:Av
7 6ywe:S 179 73 0.0905 0.1229 0.3014 0.001 6yws:S, 6ywv:S, 6ywx:S, 6ywy:S
8 7pkt:v 120 67 0.0864 0.1750 0.3134 0.005
9 7aoi:A1 217 54 0.0658 0.0737 0.2963 0.37 6hiv:A1, 6hix:A1, 6yxx:A1, 6yxy:A1
10 7aih:Q 217 54 0.0700 0.0783 0.3148 0.69 7am2:Q, 7ane:Q
11 6hd7:v 161 36 0.0494 0.0745 0.3333 1.8 4xnh:C, 4xpd:C, 4y49:C, 4y49:I, 4y49:O
12 3ppe:A 203 19 0.0412 0.0493 0.5263 2.6 3ppe:B
13 6o07:C 139 33 0.0453 0.0791 0.3333 3.0
14 6c66:H 329 38 0.0535 0.0395 0.3421 3.5 5u07:I, 5u0a:I
15 6c66:B 334 38 0.0535 0.0389 0.3421 3.5
16 6c66:C 367 38 0.0535 0.0354 0.3421 3.8 6c66:D, 6c66:E, 6c66:F, 5u07:E, 5u07:F, 5u07:G, 5u07:H, 5u0a:E, 5u0a:F, 5u0a:G, 5u0a:H
17 5u07:D 260 38 0.0535 0.0500 0.3421 4.0 5u0a:D
18 1w78:A 414 49 0.0741 0.0435 0.3673 5.0 1w7k:A
19 6bz0:A 469 58 0.0947 0.0490 0.3966 5.2 6bz0:B, 6bz0:C, 6bz0:D
20 1xg5:C 257 30 0.0576 0.0545 0.4667 6.1 1xg5:A, 1xg5:B, 1xg5:D
21 7rtm:A 571 38 0.0535 0.0228 0.3421 7.0 7rtm:B
22 5r7x:B 344 87 0.0905 0.0640 0.2529 9.8 4c8d:A, 5r7x:A, 5raa:A, 5raa:B, 5rab:A, 5rab:B, 5rac:A, 5rac:B, 5rad:A, 5rad:B, 5rae:A, 5rae:B, 5raf:A, 5raf:B, 5rag:A, 5rag:B, 5rah:A, 5rah:B, 5rai:A, 5rai:B, 5raj:A, 5raj:B, 5rak:A, 5rak:B, 5ral:A, 5ral:B, 5ram:A, 5ram:B, 5ran:A, 5ran:B, 5rao:A, 5rao:B, 5rap:A, 5rap:B, 5raq:A, 5raq:B, 5rar:A, 5rar:B, 5ras:A, 5ras:B, 5rau:A, 5rau:B, 5rav:A, 5rav:B, 5raw:A, 5raw:B, 5rax:A, 5rax:B, 5ray:A, 5ray:B, 5raz:A, 5raz:B, 5rb0:A, 5rb0:B, 5rb1:A, 5rb1:B, 5rb2:A, 5rb2:B, 5rb3:A, 5rb3:B, 5rb4:A, 5rb4:B, 5rb5:A, 5rb5:B, 5rb6:A, 5rb6:B, 5rb7:A, 5rb7:B, 6rbj:A, 6rbj:B, 6ydv:AAA, 6ydv:BBB

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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