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BioLiP
>protein
PLGSMSRRNPCKFEIRGHCLNGKRCHFSHNYFEWPPHALLVRQNFMLNRILKSMDKSIDTLSEIELDRTEEYALGVVGVL
ESYIGSINNITKQSACVAMSKLLTELNSDDIKKLRDNEELNSPKIRVYNTVISYIESNRKNNKQTIHLLKRLPADVLKKT
IKNTLDIHKSITIN

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4c3b:C 178 178 1.0000 0.9775 0.9775 1.12e-126 4c3b:A, 4c3b:B, 4c3b:D, 4c3b:E, 4c3b:F, 4c3b:G, 4c3b:H, 4c3b:I, 4c3b:J, 4c3b:K, 4c3b:L, 4c3b:M, 4c3b:N, 4c3b:O, 4c3b:P, 4c3e:A, 4c3e:B, 4c3e:C, 4c3e:D, 4c3e:E, 4c3e:F, 4c3e:G, 4c3e:H, 4c3e:I, 4c3e:J, 4c3e:K, 4c3e:L, 4c3e:M, 4c3e:N, 4c3e:O, 4c3e:P, 6g0y:F, 6g0y:E, 6g0y:A, 6g0y:C, 6pzq:B, 6pzq:D
2 6pzq:A 157 170 0.9023 1.0000 0.9235 2.73e-112 6pzq:C
3 4cs7:C 172 165 0.3621 0.3663 0.3818 7.77e-37 4cs7:A, 4cs7:B, 4cs7:E, 4cs8:A, 4cs8:B, 4cs8:C, 4cs8:E, 4cs9:A, 4cs9:B, 4cs9:C, 4cs9:E, 4csa:C, 4csa:A, 4csa:B, 4csa:E
4 7abi:P 237 128 0.1897 0.1392 0.2578 0.61 7aav:P, 7abg:P
5 8ch6:U 295 138 0.1839 0.1085 0.2319 0.80 7a5p:P, 8c6j:M, 6ff4:P, 6ff7:P, 9fmd:O, 8i0p:O, 8i0r:O, 8i0s:O, 8i0t:O, 8i0u:O, 8i0v:O, 8i0w:O, 6icz:O, 6id0:O, 6id1:O, 5mqf:P, 6qdv:M, 7qtt:U, 8ro2:O, 7w59:O, 7w5a:O, 7w5b:O, 5xjc:O, 5yzg:O, 5z56:O, 5z57:O, 6zym:P
6 2cqe:A 98 22 0.0632 0.1122 0.5000 1.1
7 2cqe:A 98 26 0.0575 0.1020 0.3846 9.1
8 7k95:A 53 30 0.0690 0.2264 0.4000 1.3 7zyh:A, 7zyh:D, 7zyh:G, 7zyh:J
9 6xr0:M 683 49 0.0862 0.0220 0.3061 1.7
10 2zba:D 391 49 0.0920 0.0409 0.3265 3.8
11 6ww7:A 927 46 0.1092 0.0205 0.4130 4.1
12 3kak:B 437 43 0.0977 0.0389 0.3953 4.2
13 2zba:A 435 49 0.0920 0.0368 0.3265 4.4 2zba:B, 2zba:C
14 3kal:A 470 43 0.0977 0.0362 0.3953 4.6 3kak:A, 3kal:B
15 5gp4:A 441 33 0.0575 0.0227 0.3030 5.5 5gp4:C, 5gp4:B
16 8u87:A 621 115 0.1494 0.0419 0.2261 5.8 8u7y:A, 8u7y:B, 8u85:A, 8u85:C, 8u86:A, 8u86:C, 8u87:C
17 8ro0:O 342 36 0.0805 0.0409 0.3889 7.3 8ro1:O
18 6pwy:B 513 38 0.0805 0.0273 0.3684 7.8 6pwy:A, 6pwy:D, 6pwy:C
19 2d9n:A 77 21 0.0575 0.1299 0.4762 8.8 2rhk:C
20 4ii1:B 139 21 0.0517 0.0647 0.4286 9.3 4ii1:A, 4ii1:C, 4ii1:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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