Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PLGSMKIELSGGYICYSIEEDEVTIDMVEVTTKRQGIGSQLIDMVKDVAREVGLPIGLYAYPQDDSISQEDLIEFYFSND
FEYDPDDVDGRLMRWS

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6iuf:A 96 96 1.0000 1.0000 1.0000 1.91e-66 6iuf:B
2 4ail:C 750 90 0.2708 0.0347 0.2889 1.2 2jgu:A
3 8v9l:x 387 28 0.1250 0.0310 0.4286 1.4 7vok:A, 7vok:B, 7vok:C, 7vok:D
4 8hey:D 1270 30 0.0938 0.0071 0.3000 1.5
5 2h5m:A 102 41 0.1458 0.1373 0.3415 1.6
6 1zun:A 204 65 0.1562 0.0735 0.2308 1.8
7 6k7l:A 992 42 0.1354 0.0131 0.3095 2.0 6k7i:A, 6k7j:A, 6k7k:A, 6k7m:A, 6k7n:A
8 1bg0:A 356 47 0.1250 0.0337 0.2553 2.4 4gvy:A, 4gvz:A, 4gw0:A, 4gw2:A, 5j99:A, 5j9a:A, 1m15:A, 1p50:A, 1p52:A, 1rl9:A, 1sd0:A
9 7eto:a 1297 27 0.0938 0.0069 0.3333 2.6 7et3:a, 7etj:a
10 7b0h:F 762 77 0.1979 0.0249 0.2468 3.0 7b07:A, 7b08:A, 7b0f:A, 7b0g:A, 7b0h:E, 1qqc:A, 5vu8:A, 2vwj:A, 2xhb:A
11 5wqe:A 1011 36 0.1458 0.0138 0.3889 3.4
12 1a8t:A 230 46 0.1250 0.0522 0.2609 4.8 1a7t:A, 1a7t:B, 1a8t:B, 2bmi:A, 2bmi:B, 1hlk:A, 1hlk:B, 1kr3:A, 1kr3:B, 1znb:A, 1znb:B, 2znb:A, 2znb:B, 3znb:A, 3znb:B, 4znb:A, 4znb:B
13 4h7u:A 577 25 0.1146 0.0191 0.4400 5.0
14 4hg3:A 304 36 0.1250 0.0395 0.3333 5.3 4hg3:B, 4hg3:C, 4hg3:D, 4hg5:A, 4hg5:B, 4hg5:C, 4hg5:D, 4hgd:A, 4hgd:B, 4hgd:C, 4hgd:D
15 4v63:AX 354 49 0.1458 0.0395 0.2857 6.0 4v4r:AY, 4v63:CX, 4v7p:AV, 4v7p:DV
16 3msu:B 426 42 0.1667 0.0376 0.3810 6.1 3msu:A
17 4pv6:G 154 36 0.1250 0.0779 0.3333 6.8 4pv6:C, 4pv6:I, 4pv6:F, 4pv6:A, 4pv6:H, 4pv6:J, 4pv6:E
18 4flu:A 758 75 0.2292 0.0290 0.2933 7.1 4flt:A, 4flv:A, 4flw:A, 4flx:A, 4fly:A, 4flz:A, 4fm0:A, 4fm1:A, 4fm2:A
19 2awn:C 344 44 0.1875 0.0523 0.4091 7.1
20 2awn:B 374 44 0.1875 0.0481 0.4091 8.1 2awo:A, 2awo:B, 2awo:C, 4ki0:A, 4ki0:B, 3puv:A, 3puv:B, 3puw:A, 3puw:B, 3pux:A, 3pux:B, 3puy:A, 3puy:B, 3puz:A, 3puz:B, 1q12:A, 1q12:B, 1q12:C, 1q12:D, 2r6g:A, 2r6g:B, 3rlf:A, 3rlf:B
21 4etz:B 289 64 0.1771 0.0588 0.2656 8.5 4dmz:A, 4dmz:B, 4dn0:A, 4etz:A, 4eu0:A, 4euv:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218