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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PLGAYTASDGDTAMKAFNDTFWDPNAKMFWKDSKREKHQDAWVEAELWELVMDAYQHTSDPALKAELKTQIDDVYDGTVA
KYGQDWTNNPFNDDIMWWAMGSARAYQITGNPRYLEAARDHFDFVYDTQWDEEFANGGIWWLNSDHNTKNACINFPAAQA
ALYLYDITKDEHYLNAATKIFRWGKTMLTDGNGKVFDRIEIEHGAVPDATHYNQGTYIGSAVGLYKATGNAVYLDDAVKA
AKFTKNHLVDSNGVLNYEGPNGDLKGGKTILMRNLAHLQKTLDETGQYPEFSAEFDEWLAFNIEMAWSHRNSDHIVDGNW
AGQLLSGTYESWSSAAAVQALNGI

The query sequence (length=344) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5agd:B 344 338 0.9709 0.9709 0.9882 0.0 5agd:A, 4boj:A, 4boj:B, 4boj:C, 4d4b:A, 4d4b:B, 4d4c:A, 4d4c:B, 4d4d:A, 4d4d:B, 5m77:A, 5m77:B, 5n0f:A, 5n0f:B, 7nl5:A, 6zbm:A, 6zbw:A, 6zbw:B, 6zbx:A, 6zbx:B
2 6shm:A 339 289 0.2820 0.2861 0.3356 3.79e-30 6y8f:A
3 2d8l:A 363 81 0.0727 0.0689 0.3086 0.090 2gh4:A
4 2d8l:A 363 48 0.0465 0.0441 0.3333 2.7 2gh4:A
5 8wbu:A 391 121 0.0901 0.0793 0.2562 0.10 7d5g:A, 8wbv:A
6 8wbu:A 391 176 0.1134 0.0997 0.2216 0.50 7d5g:A, 8wbv:A
7 8wbu:A 391 28 0.0378 0.0332 0.4643 4.4 7d5g:A, 8wbv:A
8 4g68:A 392 64 0.0552 0.0485 0.2969 0.25 4g68:B
9 8idp:A 446 69 0.0669 0.0516 0.3333 0.31 8idp:C, 8idp:B, 8idp:D, 8idq:A, 8idq:B, 8idq:C, 8idq:D
10 7vcf:T 763 81 0.0610 0.0275 0.2593 0.78
11 2hxv:A 349 78 0.0552 0.0544 0.2436 1.0
12 8idr:C 147 40 0.0465 0.1088 0.4000 1.1 8idr:A, 8idr:B, 8idr:D, 8idu:A, 8idu:B, 8idu:C, 8idu:D, 8idu:E, 8idu:F
13 6rxy:Cz 275 92 0.0640 0.0800 0.2391 1.8 6rxz:Cz
14 1iv2:A 150 107 0.0785 0.1800 0.2523 2.0 1iv2:C, 1iv2:B, 1iv2:D, 1iv2:F, 1iv2:E, 1iv3:A, 1iv3:B, 1iv3:C, 1iv3:D, 1iv3:E, 1iv3:F, 1iv4:A, 1iv4:B, 1iv4:C, 1iv4:D, 1iv4:E, 1iv4:F
15 8ht4:B 390 92 0.0814 0.0718 0.3043 2.1 8ht4:A
16 5meh:A 438 192 0.1366 0.1073 0.2448 2.7 4ayp:A, 4ayq:A, 4ayr:A, 8b5m:A, 5ne5:A
17 2q02:A 272 65 0.0610 0.0772 0.3231 2.8 4hgx:A, 4hgx:B, 2q02:B, 2q02:C, 2q02:D
18 6ex6:A 634 39 0.0523 0.0284 0.4615 6.9 6ex6:B
19 4q8g:B 353 106 0.0727 0.0708 0.2358 7.9 4q8g:A
20 3bgu:A 106 46 0.0407 0.1321 0.3043 8.1
21 2y42:D 355 49 0.0465 0.0451 0.3265 9.5 4f7i:A, 4f7i:B, 4f7i:C, 4f7i:D, 1hex:A, 4wuo:A, 4wuo:B, 2y40:A, 2y40:B, 2y41:A, 2y41:B, 2y42:A, 2y42:B, 2y42:C, 2ztw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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