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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PLFDYHRIDQKLLQNIVYDALVWSTLNCLLVGDKSVQRSGRVPGVGLVHLPLSLLPGPFPESHWKQGCELAPIFNELVDR
VSLDGKFLQESLSRDEFTSRLLDIHSKMLQINKDIRMGIVRSDYMIDEKTKSLLQIEMNTISTSFALIGCLMTGLHKSLL
SQYGKFLGLNSNRVPANNAVDQSAEALAKAWSEYNNPRAAILVVVQVEERNMYEQHYISALLREKHHIRSIRKTLTEIDQ
EGKILPDGTLSVDGQAISVVYFRAGYTPKDYPSESEWRARLLMEQSSAIKCPTISYHLVGTKKIQQELAKPGVLERFVEN
KDHIAKLRACFAGLWSLEDSDIVKKAIENPELFVMKPQNNIYGDELRETLLKAAYILMQRIFPATSPAILVRDGNWDTGH
VISEAGIFGTYLRNKDKIIINNESGYMVRTKISFGVVDTVYLT

The query sequence (length=443) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3kal:A 470 468 1.0000 0.9426 0.9466 0.0 3kak:A, 3kal:B
2 3kak:B 437 453 0.9571 0.9703 0.9360 0.0
3 5oes:E 448 448 0.6637 0.6562 0.6562 0.0 5oes:A, 5oes:B, 5oes:C, 5oes:D, 5oes:F
4 2hgs:A 472 411 0.3634 0.3411 0.3917 4.52e-86
5 1m0w:A 481 447 0.3251 0.2994 0.3221 6.43e-60 1m0w:B
6 2wyo:A 520 466 0.3273 0.2788 0.3112 3.20e-45
7 5oeu:A 460 462 0.3115 0.3000 0.2987 2.88e-44
8 2wyo:C 496 459 0.3183 0.2843 0.3072 9.00e-43 2wyo:B, 2wyo:D
9 5oeu:C 412 437 0.2573 0.2767 0.2609 3.66e-31
10 5oet:B 420 415 0.2483 0.2619 0.2651 2.66e-27
11 6kgy:B 441 120 0.0655 0.0658 0.2417 1.1 6kgy:A, 6kgy:C, 6kgy:D, 6kod:A, 6kod:B, 6kod:C, 6kod:D, 6kyy:A, 6kyy:B, 6kyy:C, 6kyy:D
12 2y4r:A 270 70 0.0474 0.0778 0.3000 1.2 2y4r:B
13 6p5v:A 373 169 0.0880 0.1046 0.2308 2.0 6b5q:A, 6b5q:B, 6bg3:A, 6bg5:A, 4i7p:A, 7kwa:A, 6p5w:A, 3tdu:B, 3tdu:A, 3tdz:A, 3tdz:B, 5ufi:A, 5ufi:B, 5ufi:C, 5ufi:D, 5v83:A, 5v86:A, 5v88:A, 6xol:A, 6xom:A, 6xon:A, 6xoo:A, 6xop:A, 6xoq:A
14 3fhq:A 601 53 0.0429 0.0316 0.3585 4.7 3fha:A, 3fha:B, 3fha:C, 3fha:D, 3fhq:B, 3fhq:D, 3fhq:F
15 1yaa:A 412 113 0.0609 0.0655 0.2389 4.8 1yaa:B, 1yaa:C, 1yaa:D
16 6f40:W 218 40 0.0271 0.0550 0.3000 5.0 6f41:W
17 1k1x:A 636 79 0.0474 0.0330 0.2658 6.4 1k1w:A, 1k1x:B, 1k1y:A, 1k1y:B
18 4l79:A 734 120 0.0677 0.0409 0.2500 7.9 6c1d:P, 6c1g:P
19 6is5:B 304 55 0.0451 0.0658 0.3636 9.1 6is5:A, 6is5:C, 6is5:D
20 4on1:A 334 29 0.0316 0.0419 0.4828 9.2 4on1:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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