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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMP
QSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLCLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHG
DVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKK

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2fdj:A 207 202 0.9950 0.9710 0.9950 2.07e-152 3bi3:A, 3bie:A, 3bkz:A, 2fd8:A, 2fdf:A, 2fdg:A, 2fdh:A, 2fdi:A, 2fdk:A, 3i2o:A, 3i3m:A, 3i3q:A, 3i3q:B, 3i49:A, 4jht:A, 3khb:A, 3khb:B, 3khc:B, 3khc:A, 4nid:A, 4nig:A, 4nih:A, 4nii:A, 7nro:A, 3o1m:A, 3o1o:A, 3o1p:A, 3o1r:A, 3o1s:A, 3o1t:A, 3o1u:A, 3o1v:A, 4rfr:B, 3t3y:A, 3t4h:B, 3t4v:A, 6y0q:A, 6ypv:A, 4zhn:A
2 5xoi:A 227 227 0.3663 0.3260 0.3260 2.29e-21 5xeg:A
3 6imc:D 340 98 0.1782 0.1059 0.3673 4.28e-15 6imc:A, 6imc:B, 6imc:C, 6ksf:A, 6l94:A
4 8k62:A 326 98 0.1634 0.1012 0.3367 2.09e-14 6ie2:A, 6ie2:B, 6ie2:C, 6ie2:D, 6ie2:E, 6ie2:F, 6ie2:G, 6ie2:H, 6ie3:A
5 3tht:B 312 125 0.1980 0.1282 0.3200 0.002 3thp:A, 3tht:A, 3tht:C, 3tht:D
6 4npl:A 213 96 0.1386 0.1315 0.2917 0.38 4npl:B, 4npm:A, 4npm:B
7 6riw:A 923 71 0.0990 0.0217 0.2817 0.59
8 1xim:A 392 122 0.1436 0.0740 0.2377 6.5 1xim:B, 1xim:C, 1xim:D, 1xin:A, 1xin:B, 1xin:C, 1xin:D, 2xim:A, 2xim:B, 2xim:C, 2xim:D, 2xin:A, 2xin:B, 2xin:C, 2xin:D, 3xim:A, 3xim:B, 3xim:C, 3xim:D, 4xim:A, 4xim:B, 4xim:C, 4xim:D, 5xim:A, 5xim:B, 5xim:C, 5xim:D, 5xin:A, 5xin:B, 5xin:C, 5xin:D, 6xim:A, 6xim:B, 6xim:C, 6xim:D, 8xim:A, 8xim:B, 8xim:C, 8xim:D, 9xim:A, 9xim:B, 9xim:C, 9xim:D
9 3pa1:A 315 27 0.0594 0.0381 0.4444 8.9 5bsx:A, 5bsy:A, 6gw1:A, 6gw1:B, 6gw2:A, 6gw2:B, 6gy9:A, 6gy9:B, 5hza:A, 5hza:B, 5hzb:B, 5hzb:A, 3ony:A, 3ony:B, 3ony:C, 3pa1:B, 3pa2:A, 3pa2:B, 3q38:A, 3q39:A, 3q39:B, 3q3a:B, 3q3a:A, 3ry8:A, 8y6c:B, 8y6c:A, 8y6d:B, 8y6d:A, 4z4r:A, 4z4r:B, 4z4s:A, 4z4s:B, 4z4t:A, 4z4t:B, 4z4u:A, 4z4u:B, 4z4v:A, 4z4v:B, 4z4w:A, 4z4w:B, 4z4y:A, 4z4z:A, 4z4z:B
10 6otf:B 521 27 0.0594 0.0230 0.4444 9.6 6otf:A, 6otf:C, 6ouc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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