Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PKVAVRECGLPVSAIESLCCTDSFALIRRQVRETAWLKGEGKRLAVDLGLLIGERGPVLVGLRRALHTGRLPDAREWTPR
VASALPAELAARVADWVTRMRALTRARRELPELFAAEARVKEKVLAQVAADPGFRRALSLASPELAADLDRWLAEPARRP
KTQKLLRLAKYVARAAVKTSPYSTFTSMGVAVWENGEDWADGAIVRFAPREPPSVILEPSGEWLHGALRAWLARPENLVR
SRLRLNPSLVIRADKAEFLGFPPREPIIRMGLTPVVATVLRLAEPAADADGWIDPMGFRDRLARDLPAEPEQVDRLLRSL
IEAGVLEAHPLTRAGLPETGEWAEIRAALRHDPHGEDPEAYRVRLARLKRAMTMMWPQGDTTALLHETAVVTRPVASLNP
TAWGRGLSDLDVVRRWLSVFDGKLPIRIVVAEYLRARYGEHARVPFLTFHRHVQEEIAGDAPSGADLRTFVGRSAAIWAP
PLAHSRLPRLRELAKLREAARELALGRPEHDGIQRVDPEELIKQMATWPEWIVVPRSCACYVQPAPEGRLVLNVVHGGHG
RGLRRLSHLIGRVRGEAVDHPMVADEPEGTVYAELSGSLGSTLNVHVPGTRYEIDYPFSPGDRSRDRRLPLSDLEVVLAP
ETGLAELRSRRLGFRVIPLHLGMAAEFQLPPAARFLERAFGVTYLPQEVTRYPRVEVGRVVVQRRRWLAPAGTLPIRAKG
EDDASYLLRLVAWTDANGIPTRSFVRKPLFLDLANPFLVKVFERQIRDCAFVLFEEALPDPADAPPREGSDLPRVIEFLV
ELG

The query sequence (length=803) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ec8:A 803 803 1.0000 1.0000 1.0000 0.0
2 6vzz:A 374 120 0.0448 0.0963 0.3000 0.016
3 5f0o:A 1018 123 0.0361 0.0285 0.2358 1.8
4 6r5k:H 394 65 0.0249 0.0508 0.3077 2.1 6r5k:D, 6r5k:F
5 7njn:C 536 76 0.0311 0.0466 0.3289 3.2 6foc:A, 6foc:B, 6foc:C, 8g08:B, 8g08:C, 8g08:A, 8g09:A, 8g09:B, 8g09:C, 8g0a:A, 8g0a:B, 8g0a:C, 8g0c:B, 8g0c:C, 8g0c:A, 8g0d:C, 8g0d:A, 8g0d:B, 8g0e:A, 8g0e:B, 8g0e:C, 7jg5:A, 7jg5:B, 7jg5:C, 7jga:A, 7jga:B, 7jga:C, 7njk:A, 7njk:B, 7njk:C, 7njl:A, 7njl:B, 7njl:C, 7njm:A, 7njm:B, 7njm:C, 7njn:A, 7njn:B, 7njo:A, 7njo:B, 7njo:C, 7njp:A, 7njp:B, 7njp:C, 7njq:A, 7njq:B, 7njq:C, 7njr:A, 7njr:B, 7njr:C, 7njs:A, 7njs:B, 7njs:C, 7nk7:A, 7nk7:B, 7nk7:C, 7nkh:A, 7nkh:B, 7nkh:C, 7nkj:A, 7nkj:B, 7nkj:C, 7y5a:A, 7y5a:B, 7y5a:C, 7y5b:A, 7y5b:B, 7y5b:C, 7y5c:A, 7y5c:B, 7y5c:C
6 6m7y:A 952 78 0.0212 0.0179 0.2179 6.6 6m7y:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218