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BioLiP
>protein
PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWL
DEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPFTFHTSEAARQEVE
RSARDYLAWLDALQ

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3f2v:A 174 174 1.0000 1.0000 1.0000 1.99e-130
2 5lva:A 174 166 0.4195 0.4195 0.4398 3.53e-50 5lva:B
3 3l9x:A 336 174 0.3678 0.1905 0.3678 1.27e-30 3l9x:B
4 3l9w:B 357 174 0.3678 0.1793 0.3678 1.73e-30 3eyw:A, 3eyw:B, 3l9w:A
5 4fgl:D 233 146 0.2759 0.2060 0.3288 2.86e-12 5buc:A, 5buc:B, 2bzs:A, 2bzs:B, 4fgj:A, 4fgj:B, 4fgk:A, 4fgk:B, 4fgl:A, 4fgl:B, 4fgl:C, 3fw1:A, 3g5m:A, 3g5m:B, 3gam:A, 3gam:B, 4gqi:A, 4gqi:B, 4gr9:A, 4gr9:B, 5lbt:A, 5lbt:B, 5lbu:A, 5lbu:B, 5lbw:A, 5lbw:B, 5lby:A, 5lby:B, 5lbz:A, 5lbz:B, 3nfr:A, 3nfr:B, 3nhf:A, 3nhf:B, 3nhj:A, 3nhj:B, 3nhk:A, 3nhk:B, 3nhl:A, 3nhl:B, 3nhp:A, 3nhp:B, 3nhr:A, 3nhr:B, 3nhs:A, 3nhs:B, 3nhu:A, 3nhu:B, 3nhw:A, 3nhw:B, 3nhy:A, 3nhy:B, 3o2n:A, 3o2n:B, 7o4d:A, 7o4d:B, 3o73:A, 3o73:B, 3ovm:A, 3ovm:B, 3owh:A, 3owh:B, 3owx:A, 3owx:B, 3ox1:A, 3ox1:B, 3ox2:A, 3ox2:B, 3ox3:A, 3ox3:B, 2qmy:A, 2qmy:B, 2qmz:A, 2qmz:B, 4qod:A, 4qod:B, 4qoe:A, 4qoe:B, 4qof:A, 4qof:B, 4qog:A, 4qog:B, 4qoh:A, 4qoh:B, 4qoi:A, 4qoi:B, 4qoj:A, 4qoj:B, 1qr2:A, 1qr2:B, 2qr2:A, 2qr2:B, 2qwx:A, 2qwx:B, 2qx4:A, 2qx4:B, 2qx6:A, 2qx6:B, 2qx8:A, 2qx8:B, 2qx9:A, 2qx9:B, 1sg0:A, 1sg0:B, 3te7:A, 3te7:B, 3tem:A, 3tem:B, 3tzb:A, 3tzb:B, 3tzb:C, 3tzb:D, 4u7f:A, 4u7f:B, 4u7g:A, 4u7g:B, 4u7h:A, 4u7h:B, 3uxe:A, 3uxe:B, 3uxh:A, 3uxh:B, 4xdg:A, 4xdg:B, 4xdh:A, 4xdh:B, 1xi2:A, 1xi2:B, 4zvk:A, 4zvk:B, 4zvl:A, 4zvl:B, 4zvm:A, 4zvm:B, 4zvn:A, 4zvn:B, 1zx1:A, 1zx1:B
6 1dxq:A 273 88 0.1609 0.1026 0.3182 3.25e-10 1dxq:C, 1dxq:B, 1dxq:D, 1qrd:A, 1qrd:B
7 4gi5:B 261 120 0.1897 0.1264 0.2750 4.52e-10 4gi5:A
8 5ea2:C 276 88 0.1667 0.1051 0.3295 5.01e-09 5a4k:A, 5a4k:B, 5a4k:C, 5a4k:D, 8c9j:A, 8c9j:B, 8c9j:C, 8c9j:D, 4cet:A, 4cf6:A, 4cf6:B, 1d4a:A, 1d4a:B, 1d4a:D, 1d4a:C, 1dxo:A, 1dxo:C, 1dxo:B, 1dxo:D, 5ea2:A, 5ea2:E, 5ea2:G, 5eai:A, 5eai:B, 5eai:C, 5eai:D, 5eai:E, 5eai:F, 5eai:G, 5eai:H, 5eai:I, 5eai:J, 5eai:K, 5eai:L, 5eai:M, 5eai:N, 2f1o:A, 2f1o:C, 2f1o:B, 2f1o:D, 2f1o:E, 2f1o:F, 2f1o:G, 2f1o:H, 5fuq:A, 5fuq:B, 6fy4:A, 6fy4:B, 6fy4:C, 6fy4:D, 1gg5:A, 1gg5:C, 1gg5:B, 1gg5:D, 1h66:A, 1h66:C, 1h66:B, 1h66:D, 1h69:A, 1h69:C, 1h69:B, 1h69:D, 3jsx:A, 3jsx:B, 3jsx:C, 3jsx:D, 3jsx:E, 3jsx:G, 3jsx:F, 3jsx:H, 1kbo:A, 1kbo:C, 1kbo:B, 1kbo:D, 1kbq:A, 1kbq:C, 1kbq:B, 1kbq:D, 6llc:A, 6llc:D, 6llc:B, 6llc:F, 6llc:C, 6llc:E, 6llc:G, 6llc:H, 6llc:I, 6llc:J, 6llc:K, 6llc:L, 8ok0:A, 8ok0:D, 8ok0:B, 8ok0:C, 8pqn:A, 8pqn:B, 8pqn:C, 8pqn:D, 1qbg:A, 1qbg:B, 1qbg:C, 1qbg:D, 8rfm:A, 8rfm:B, 8rfm:C, 8rfm:D, 8rfn:A, 8rfn:B, 8rfn:C, 8rfn:D
9 4r81:A 199 88 0.1609 0.1407 0.3182 5.06e-08 4r81:B, 4r81:C, 4r81:D
10 2b3d:A 193 140 0.2069 0.1865 0.2571 3.12e-06 2b3d:B
11 3rpe:A 196 117 0.1724 0.1531 0.2564 2.88e-04 3rpe:B
12 4f8y:A 196 114 0.1667 0.1480 0.2544 0.001 4f8y:B, 4f8y:C, 4f8y:D, 3lcm:A, 3lcm:B, 3lcm:C, 3lcm:D
13 4m0c:A 212 147 0.1954 0.1604 0.2313 0.005 4m0c:B
14 3r6w:A 211 47 0.0977 0.0806 0.3617 0.047 3keg:A, 3keg:B, 3lt5:A, 3lt5:B, 4n65:A, 4n65:B, 4n9q:A, 4n9q:B, 3r6w:B, 2v9c:A, 2v9c:B
15 1t5b:A 199 56 0.0920 0.0804 0.2857 0.10 1t5b:B
16 4c0w:A 200 52 0.1092 0.0950 0.3654 0.23 4c0x:A, 4c14:A
17 4ese:A 193 55 0.0920 0.0829 0.2909 0.31
18 6dxp:A 206 85 0.1667 0.1408 0.3412 0.42 6dxp:C, 6dxp:B, 6dxp:D, 8h4j:A, 8h4j:B, 8h4j:C, 8h4j:D, 8h4j:E, 8h4j:F, 8h4j:G, 8h4j:H, 7n2w:A, 7n2w:B, 7n2w:C, 7n2w:D
19 3w78:A 210 61 0.1207 0.1000 0.3443 0.87 3w78:B, 3w78:D, 3w78:C, 3w79:A, 3w79:B, 3w79:C, 3w79:D, 3w7a:A, 3w7a:B, 3w7a:C, 3w7a:D
20 7n2x:A 201 61 0.1034 0.0896 0.2951 1.1 2d5i:A, 1v4b:A, 2z98:A, 2z9b:A, 2z9c:A, 2z9d:A, 2z9d:B
21 6ih6:A 330 54 0.0920 0.0485 0.2963 2.5 6ih3:A, 6ih5:B, 6ih6:B
22 6qu0:A 211 32 0.0575 0.0474 0.3125 4.1 6qu0:B
23 1a0i:A 332 82 0.1437 0.0753 0.3049 4.7
24 8jrv:R 319 28 0.0690 0.0376 0.4286 7.5
25 7eja:R 269 26 0.0690 0.0446 0.4615 8.1 9cbl:R, 9cbm:R, 7ej0:R, 7ej8:R, 7ejk:R, 7w6p:R, 7w7e:R
26 5aed:A 674 31 0.0575 0.0148 0.3226 8.1 5aed:B, 5aee:A, 5aee:B, 5aeg:A, 5aeg:B, 5oht:A, 5oht:B
27 6wpw:R 398 29 0.0690 0.0302 0.4138 9.4 8fu6:R, 8jiq:R, 8jit:R, 8jiu:R, 6lmk:R, 6lml:R, 7v35:R
28 2hpv:A 207 51 0.0977 0.0821 0.3333 9.5 2hpv:B, 2hpv:C, 2hpv:D
29 6kux:A 375 26 0.0690 0.0320 0.4615 9.7 6kuy:A
30 5yqz:R 558 24 0.0690 0.0215 0.5000 9.7 5xez:A, 5xf1:A
31 5xez:B 499 29 0.0690 0.0240 0.4138 9.7 5xf1:B
32 6whc:R 371 28 0.0690 0.0323 0.4286 9.8 8jru:R, 8wg8:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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