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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PKSKRARVYHLIQVNKKGREAKERLFSNIRETIPKYQHCFVFSVDNMRNNYLKDVRHELNDCRIFFGKTKLMARALGTTP
EEEQADGLHRLTRYLTGTVGLLFTNRDPADIESYFSNLSQVDFARAGTVAPRTVTVPTGIVYSTGGEVPPEHDVPVSHTL
EPELRRLGMPVRMIKGKVCLGDEKGEASEGYTICKEGEVLDSRQTRLLKLFSICLSEFKVSLLGYWNSASGEVTELEAGK
TRPKR

The query sequence (length=245) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8i9t:CF 245 245 1.0000 1.0000 1.0000 0.0 8i9v:CF, 8i9w:CF, 8i9x:CF, 8i9y:CF, 8i9z:CF, 8ia0:CF, 8pv1:CF, 8pv2:CF, 8pv3:CF, 8pv4:CF, 8pv5:CF, 8pv6:CF, 8pv7:CF, 8pv8:CF, 8pvk:CF, 8pvl:CF
2 8esq:W 215 233 0.4531 0.5163 0.4764 2.78e-69 8esr:W, 8etc:W, 8etg:W, 8etj:W
3 4v7f:n 236 234 0.3755 0.3898 0.3932 7.01e-61 7bt6:W, 7btb:W, 6elz:W, 6em1:W, 6em5:W, 6ft6:W, 8hfr:Wg, 3jct:W, 5jcs:n, 6m62:W, 6n8j:W, 6n8k:W, 7nac:W, 7of1:W, 7oh3:W, 7ohp:W, 7ohq:W, 7ohr:W, 7oht:W, 7ohu:W, 7ohv:W, 7ohy:W, 7r7a:W, 7u0h:W, 7ug6:W, 7uoo:W, 7uqb:W, 7uqz:W, 7v08:W, 8v83:W, 8v84:W, 8v87:W, 6ylg:W, 6ylh:W, 6ylx:W, 6yly:W, 7z34:W
4 8idt:J 223 221 0.3633 0.3991 0.4027 8.94e-55 8fkr:SQ, 8fks:SQ, 8fkt:SQ, 8fku:SQ, 8fkv:SQ, 8fkw:SQ, 8fkx:SQ, 8fky:SQ, 8fkz:SQ, 8fl0:SQ, 8fl2:SQ, 8fl3:SQ, 8fl4:SQ, 8fl6:SQ, 8fl7:SQ, 8fl9:SQ, 8idy:J, 8ie3:J, 8ine:J, 8inf:J, 8ink:v, 8ipd:v, 8ipx:v, 8ipy:v, 8ir1:v, 8ir3:v
5 8eti:W 173 214 0.3551 0.5029 0.4065 3.12e-41
6 7ohw:W 185 219 0.2857 0.3784 0.3196 8.67e-31
7 7ohs:W 172 213 0.2735 0.3895 0.3146 1.16e-28
8 8fla:SQ 127 106 0.1796 0.3465 0.4151 1.87e-26 8flb:SQ, 8flc:SQ, 8fld:SQ, 8fle:SQ, 8flf:SQ
9 6n8l:W 133 110 0.1551 0.2857 0.3455 1.27e-21
10 7olc:Ls 189 196 0.2163 0.2804 0.2704 3.52e-11 7old:Ls, 8oo0:Ls, 7z3n:Ls, 7z3o:Ls
11 8c3a:P0 107 99 0.1347 0.3084 0.3333 1.08e-09 8c3a:p0, 8cq7:P0, 8cq7:p0, 8cqw:P0, 8cre:P0, 8cre:p0
12 4v9f:G 254 127 0.1469 0.1417 0.2835 3.87e-08 2qa4:G
13 5dat:p0 143 127 0.1469 0.2517 0.2835 1.23e-07 8aaf:0, 8agt:0, 8agu:0, 8agv:0, 8agw:0, 8agx:0, 8agz:0, 5apn:q, 5apo:q, 5dge:p0, 5dgf:p0, 5fcj:p0, 5i4l:p0, 6i7o:BU, 6i7o:YU, 3j77:P0, 3j78:P0, 5mei:p0, 5ndg:p0, 5obm:p0, 6r84:r, 6r86:r, 6r87:r, 6sv4:BU, 6sv4:YU, 6sv4:ZU, 6t83:ba, 5tbw:p0, 5tga:p0, 5tgm:p0, 4u3m:p0, 4u3n:p0, 4u3u:p0, 4u4n:p0, 4u4o:p0, 4u4q:p0, 4u4r:p0, 4u4u:p0, 4u4y:p0, 4u4z:p0, 4u50:p0, 4u51:p0, 4u52:p0, 4u53:p0, 4u55:p0, 4u56:p0, 4u6f:p0, 4v7r:DM, 4v8y:Bq, 4v8z:Bq
14 5dc3:p0 143 100 0.1265 0.2168 0.3100 2.64e-07 5dgv:p0, 5fci:p0, 6hhq:p0, 5lyb:p0, 6oig:q, 5on6:p0, 4v88:Dq, 4v8t:q
15 4v6i:Bs 257 100 0.1265 0.1206 0.3100 5.08e-07 8ccs:DD, 8cdl:DD, 8cdr:DD, 8ceh:DD, 8cf5:DD, 8cg8:DD, 8cgn:DD, 8civ:DD, 8cku:DD, 8cmj:DD, 8eub:VA, 8evq:V, 8evr:V, 8evs:V, 8ewb:V, 6gq1:P0, 6gqb:P0, 6gqv:P0, 3j16:G, 5juo:VA, 5jup:VA, 5jus:VA, 5jut:VA, 5juu:VA, 8k2d:P0, 8k82:P0, 7osa:uL10, 7osm:uL10, 7rr5:P0, 4v7h:B8, 6woo:r, 6xiq:P0, 8y0u:P0
16 5it7:rr 195 98 0.1184 0.1487 0.2959 2.37e-06 6uz7:Br
17 4v4n:Ak 212 212 0.1796 0.2075 0.2075 2.43e-06 4v6u:Bk
18 7ohx:W 122 166 0.1469 0.2951 0.2169 3.44e-06
19 4v6x:Cq 280 214 0.2082 0.1821 0.2383 4.70e-05 7a01:K2, 5aj0:AK, 9bdn:ALP0, 9bdp:ALP0, 8bhf:e1, 8bpo:q2, 8btk:Bs, 6d90:s, 6d9j:s, 9f1b:Bs, 9f1c:Bs, 9f1d:Bs, 6frk:6, 6ftg:s, 6fti:s, 6ftj:s, 8g5z:Lq, 8g60:Lq, 8g6j:Lq, 6gz3:AK, 6gz4:AK, 6gz5:AK, 6hcf:s3, 6hcj:t3, 6hcm:s3, 6hcq:t3, 3j7p:q, 3j92:s, 3jag:s, 3jah:s, 3jai:s, 3jaj:q, 3jan:q, 8k2c:Ls, 7ls1:j, 7ls2:j, 5lzs:s, 5lzt:s, 5lzu:s, 5lzv:s, 5lzw:s, 5lzx:s, 5lzy:s, 5lzz:s, 6mtd:s, 6mte:s, 7nwg:t3, 7nwh:s, 7nwi:s, 7o7y:Bs, 7o7z:Bs, 7o80:Bs, 7o81:Bs, 6olg:AK, 7oyd:s, 8p2k:Bs, 8q87:Bs, 6r5q:s, 6r6g:s, 6r6p:s, 6r7q:s, 8scb:s, 6sgc:s2, 6t59:s3, 4v6w:Cq, 8xsx:Ls, 8xsy:Ls, 8xsz:Ls, 8yoo:Ls, 8yop:Ls, 6zm7:Ls, 6zme:Ls, 6zmi:Ls, 6zmo:Ls, 6zvk:K2
20 7zjw:Lt 115 99 0.1102 0.2348 0.2727 5.14e-05
21 5d8h:B 207 133 0.1347 0.1594 0.2481 8.89e-04 5d6g:A, 5dar:E
22 4v3p:Ls 262 82 0.0857 0.0802 0.2561 0.004 4v7e:Cq
23 7zmb:4 494 80 0.0939 0.0466 0.2875 0.25 7zme:4, 7zmg:4, 7zmh:4
24 5dar:B 160 81 0.0776 0.1187 0.2346 0.45
25 5an9:C 205 109 0.0939 0.1122 0.2110 1.7 5anb:C, 5anc:C, 6qkl:C
26 3ltl:A 191 49 0.0694 0.0890 0.3469 5.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218