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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PKSACGVCPGRLRGVRAVRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQ

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7qgg:h 116 69 1.0000 0.5431 0.9130 9.35e-38 7a01:y2, 8a3d:a, 5aj0:Ag, 8b5l:g, 8b6c:g, 9bdl:AL34, 9bdn:AL34, 9bdp:AL34, 7bhp:Lg, 8bhf:T1, 8bpo:f2, 8btk:Bg, 7cpu:Lg, 7cpv:Lg, 4d5y:g, 4d67:g, 6d90:g, 6d9j:g, 9f1b:Bg, 9f1c:Bg, 9f1d:Bg, 7f5s:Lg, 8fky:LR, 8fkz:LR, 8fl2:LR, 8fl3:LR, 8fl4:LR, 8fl6:LR, 8fl7:LR, 8fl9:LR, 8fla:LR, 8flb:LR, 8flc:LR, 8fld:LR, 8fle:LR, 8flf:LR, 6frk:g, 6ftg:g, 6fti:g, 6ftj:g, 8g5y:Lg, 8g5z:Lg, 8g60:Lg, 8g61:Lg, 8g6j:Lg, 8glp:Lg, 6gz3:Ag, 6gz4:Ag, 6gz5:Ag, 6hcf:g3, 6hcj:g3, 6hcm:g3, 6hcq:g3, 8idt:F, 8idy:F, 8ie3:F, 8ifd:2a, 8ife:2a, 8ine:F, 8inf:F, 8ink:F, 6ip5:2a, 6ip6:2a, 6ip8:2a, 8ipd:F, 8ipx:F, 8ipy:F, 8ir1:F, 8ir3:F, 3j7o:g, 3j7p:g, 3j7q:g, 3j7r:g, 3j92:g, 3jag:g, 3jah:g, 3jai:g, 3jaj:g, 3jan:g, 8jdj:l, 8jdk:l, 8jdl:l, 8jdm:l, 8k2c:Lg, 5lks:Lg, 6lqm:F, 6lsr:F, 6lss:F, 7ls1:a2, 7ls2:a2, 6lu8:F, 5lzs:g, 5lzt:g, 5lzu:g, 5lzv:g, 5lzw:g, 5lzx:g, 5lzy:g, 5lzz:g, 7mdz:g, 6mtb:g, 6mtc:g, 6mtd:g, 6mte:g, 7nfx:g, 7nwg:g3, 7nwh:g, 7nwi:g, 7o7y:Bg, 7o7z:Bg, 7o80:Bg, 7o81:Bg, 7obr:g, 8ohd:Lg, 8oj0:Lg, 8oj5:Lg, 8oj8:Lg, 6ole:h, 6olf:h, 6olg:Ag, 6oli:h, 6olz:Ag, 6om0:h, 6om7:h, 7ow7:a, 7oya:g1, 7oyb:g1, 7oyc:g1, 7oyd:g, 8p2k:Bg, 6p5i:Ag, 6p5j:Ag, 6p5k:Ag, 6p5n:Ag, 8q7z:Bg, 8q87:Bg, 8qfd:g, 8qoi:Lg, 7qvp:Lg, 7qvp:Mg, 7qwq:g, 7qwr:g, 7qws:g, 6qzp:Lg, 6r5q:g, 6r6g:g, 6r6p:g, 6r7q:g, 8rjb:g, 8rjc:g, 8rjd:g, 8scb:g, 6sgc:g2, 6swa:e, 5t2c:a, 6t59:g3, 7tm3:g, 7toq:AL34, 7tor:AL34, 7tut:g, 7ucj:g, 7uck:g, 4ug0:Lg, 4ujc:Bg, 4ujd:Ag, 4uje:Cg, 4v6x:Cg, 6w6l:h, 6xa1:Lg, 7xnx:Lg, 7xny:Lg, 8xsx:Lg, 8xsy:Lg, 8xsz:Lg, 6y0g:Lg, 8y0w:Lg, 8y0x:Lg, 6y2l:Lg, 6y57:Lg, 6y6x:Lg, 8yoo:Lg, 8yop:Lg, 6z6l:Lg, 6z6m:Lg, 6z6n:Lg, 7zjw:Lj, 7zjx:Lj, 6zm7:Lg, 6zme:Lg, 6zmi:Lg, 6zmo:Lg, 6zvk:y2
2 8pv1:Lg 118 65 0.6508 0.3475 0.6308 1.51e-18 8i9x:Lg, 8i9y:Lg, 8i9z:Lg, 8ia0:Lg, 7olc:Lg, 7old:Lg, 8oo0:Lg, 8pv2:Lg, 8pv3:Lg, 8pv4:Lg, 8pv5:Lg, 8pv6:Lg, 8pv7:Lg, 8pv8:Lg, 8pvk:Lg, 8pvl:Lg, 7r81:i1, 7z3n:Lg, 7z3o:Lg
3 6woo:g 121 65 0.6190 0.3223 0.6000 5.22e-18 8aaf:T, 8agt:T, 8agu:T, 8agv:T, 8agw:T, 8agx:T, 8agz:T, 5apn:g, 5apo:g, 7azy:B, 7b7d:Lc, 8bip:Lg, 8bjq:Lg, 8bn3:O4, 8bqd:BN, 8bqx:BN, 7bt6:g, 7btb:g, 6cb1:g, 8ccs:S, 8cdl:S, 8cdr:S, 8ceh:S, 8cf5:S, 8cg8:S, 8cgn:S, 8civ:S, 8cku:S, 8cmj:S, 5dat:O4, 5dat:o4, 5dc3:O4, 5dc3:o4, 5dge:O4, 5dge:o4, 5dgf:O4, 5dgf:o4, 5dgv:O4, 5dgv:o4, 6elz:g, 6em5:g, 8eub:Ag, 8evp:Ag, 8evq:Ag, 8evr:Ag, 8evs:Ag, 8evt:Ag, 8ewb:Ag, 8ewc:Ag, 5fci:O4, 5fci:o4, 5fcj:O4, 5fcj:o4, 6ft6:g, 5gak:i, 6gq1:g, 6gqb:g, 6gqv:g, 5h4p:g, 6hd7:i, 8hfr:g2, 6hhq:AH, 6hhq:DI, 5i4l:O4, 5i4l:o4, 6i7o:BN, 6i7o:YN, 3j6x:74, 3j6y:74, 3j77:84, 3j78:84, 3jct:g, 5jcs:g, 5juo:LA, 5jup:LA, 5jus:LA, 5jut:LA, 5juu:LA, 8k2d:Lg, 8k82:Lg, 5lyb:O4, 5lyb:o4, 5m1j:g5, 6m62:g, 5mc6:BN, 5mei:AH, 5mei:DI, 7mpi:Ag, 7mpj:Ag, 6n8j:g, 6n8k:g, 6n8l:g, 6n8m:t, 6n8n:t, 6n8o:t, 7n8b:Ag, 7nac:g, 7nad:g, 5ndg:O4, 5ndg:o4, 5ndv:O4, 5ndv:o4, 5ndw:O4, 5ndw:o4, 7nrc:Li, 7nrd:Li, 5obm:O4, 5obm:o4, 7of1:g, 7oh3:g, 7ohq:g, 7ohr:g, 6oig:g, 5on6:AH, 5on6:DI, 7osa:eL34, 7osm:eL34, 8p8m:RG, 8p8n:RG, 8p8u:RG, 8pfr:RG, 6q8y:BN, 6qik:g, 6qt0:g, 6qtz:g, 7r72:g, 7r7a:g, 6r84:i, 6r86:i, 6r87:i, 6ri5:g, 7rr5:Lg, 6rzz:g, 6s05:g, 6s47:Ai, 6snt:aj, 6sv4:BN, 6sv4:YN, 6sv4:ZN, 6t4q:Lg, 5t62:t, 5t6r:t, 6t7i:Lg, 6t7t:Lg, 6t83:gy, 6t83:R, 5tbw:AH, 5tbw:DI, 6tb3:BN, 5tga:O4, 5tga:o4, 5tgm:O4, 5tgm:o4, 6tnu:BN, 7too:AL34, 7top:AL34, 7u0h:g, 4u3m:O4, 4u3m:o4, 4u3n:O4, 4u3n:o4, 4u3u:O4, 4u3u:o4, 4u4n:O4, 4u4n:o4, 4u4o:O4, 4u4o:o4, 4u4q:O4, 4u4q:o4, 4u4r:O4, 4u4r:o4, 4u4u:O4, 4u4u:o4, 4u4y:O4, 4u4y:o4, 4u4z:O4, 4u4z:o4, 4u50:O4, 4u50:o4, 4u51:O4, 4u51:o4, 4u52:O4, 4u52:o4, 4u53:O4, 4u53:o4, 4u55:O4, 4u55:o4, 4u56:O4, 4u56:o4, 4u6f:O4, 4u6f:o4, 7ug6:g, 7uoo:g, 7uqb:g, 7uqz:g, 7v08:g, 4v6i:Bi, 4v7f:f, 4v88:Bg, 4v88:Dg, 4v8t:g, 4v8y:Bg, 4v8z:Bg, 8v87:g, 4v91:g, 6xiq:g, 6xir:g, 8y0u:Lg, 6ylg:g, 6ylh:g, 6ylx:g, 6yly:g, 7z34:g, 6z6j:Lg, 6z6k:Lg, 7zpq:Bf, 7zrs:Bf, 7zs5:Bh, 7zuw:Bf, 7zux:Ef, 7zw0:Lj
4 8c3a:AH 112 65 0.6032 0.3393 0.5846 3.21e-17 8c3a:CB, 8cq7:AH, 8cq7:CB, 8cqw:AH, 8cqw:CB, 8cre:AH, 8cre:CB, 8oeq:AH, 8oeq:CB, 7pzy:AH, 7q08:AH, 7q0f:AH, 7q0p:AH, 7q0r:AH, 8q5i:AH
5 5it7:gg 121 65 0.5714 0.2975 0.5538 1.27e-14 6uz7:Bg
6 3j79:a 106 66 0.5079 0.3019 0.4848 7.63e-14 3jbn:Aa, 3jbo:Aa, 3jbp:Aa, 8tpu:Aa, 5umd:a
7 4v6w:Cg 113 65 0.5556 0.3097 0.5385 9.77e-14 6xu6:Cg, 6xu7:Cg, 6xu8:Cg
8 6zj3:Lw 114 60 0.5714 0.3158 0.6000 2.06e-12
9 8esq:g 106 63 0.5397 0.3208 0.5397 2.19e-12 8esr:g, 8etc:g, 8etg:g, 8eug:g, 8eui:g
10 4v3p:Li 119 45 0.4286 0.2269 0.6000 3.90e-12 8azw:T, 8b2l:T3, 8ip8:PB, 8ipa:PB, 8ipb:PB, 8jiv:Cg, 7qiw:i, 7qiz:i, 4v7e:Cg
11 5xxb:f 107 68 0.5238 0.3084 0.4853 6.09e-12
12 4v8m:Bj 161 69 0.4921 0.1925 0.4493 1.50e-10 8ova:Bj, 8ove:Bj, 5t5h:j
13 9bh5:Cg 104 55 0.4127 0.2500 0.4727 1.53e-10 9cai:Cg
14 8ovj:h 127 52 0.4286 0.2126 0.5192 2.08e-10 8a3w:h, 8a98:h, 6az3:h, 3jcs:h, 8rxh:Lh, 8rxx:Lh, 5t2a:h
15 4v8p:AL 108 55 0.4286 0.2500 0.4909 2.74e-09 4v8p:DL, 4v8p:FL, 4v8p:HL
16 6zu5:LGG 100 58 0.3333 0.2100 0.3621 4.70e-07
17 5xy3:g 115 54 0.3333 0.1826 0.3889 1.50e-05
18 7qep:O4 100 55 0.3175 0.2000 0.3636 2.53e-05
19 8hku:L34E 77 43 0.2857 0.2338 0.4186 1.66e-04 8hkv:L34E, 8hky:L34E, 8hkz:L34E, 8hl1:L34E, 8hl2:L34E, 8hl3:L34E, 8hl4:L34E, 8hl5:L34E
20 6rm3:LGG 100 47 0.2698 0.1700 0.3617 2.11e-04
21 8btd:Lh 116 40 0.2222 0.1207 0.3500 6.29e-04 8br8:Lh, 8brm:Lh, 8bsi:Lh, 8bsj:Lh, 8btr:Lh, 8fru:g, 7pwg:g, 7pwo:g2
22 8p5d:LGG 104 36 0.2540 0.1538 0.4444 0.001 8p60:LGG, 8p60:KGG, 7qca:LGG
23 6x67:C 478 38 0.1746 0.0230 0.2895 0.55 5lme:A, 6x67:D, 6x68:C, 6x68:D
24 7o7g:A 627 28 0.2222 0.0223 0.5000 0.60 4lm8:A, 8qbq:A, 8qbz:A, 8qc9:A, 7qth:A
25 9b4h:A 1908 39 0.2222 0.0073 0.3590 2.3 9b4h:B, 8wa2:A, 8wa2:D, 8wa2:F, 8wa2:B, 8wa2:C, 8wa2:E
26 5a2q:d 55 39 0.1905 0.2182 0.3077 2.7 7a01:H3, 7a09:l, 5aj0:Bd, 9bdl:AS29, 9bdn:AS29, 9bdp:AS29, 8bhf:e3, 9bkd:i, 9bln:i, 8btk:AG, 7cpu:Sd, 7cpv:Sd, 4d5l:d, 4d61:d, 6d90:ee, 6d9j:ee, 9f1b:AG, 9f1c:AG, 9f1d:AG, 6fec:J, 5flx:d, 6g51:d, 6g53:d, 6g5h:d, 6g5i:d, 8g5y:Sd, 8g5z:Sd, 8g60:Sd, 8g61:Sd, 8g6j:Sd, 8glp:Sd, 6gz3:Bd, 6gz4:Bd, 6gz5:Bd, 6hcf:e1, 6hcj:e2, 6hcm:e1, 6hcq:e2, 8ifd:3E, 8ife:3E, 6ip5:3E, 6ip6:3E, 6ip8:3E, 3j7p:Sd, 3j7r:Sd, 3jag:dd, 3jah:dd, 3jai:dd, 3jaj:Sd, 3jan:Sd, 8jdj:AP, 8jdk:AP, 8jdl:AP, 8jdm:AP, 5k0y:J, 8k2c:Sd, 7k5i:d, 4kzx:d, 4kzy:d, 4kzz:d, 5lks:Sd, 7ls1:H3, 7ls2:H3, 5lzs:dd, 5lzt:dd, 5lzu:dd, 5lzv:dd, 5lzw:dd, 5lzx:dd, 5lzy:dd, 5lzz:dd, 7mdz:dd, 6mtb:dd, 6mtc:dd, 6mtd:dd, 6mte:dd, 7nwg:e2, 7nwh:dd, 7nwi:dd, 7o7y:AG, 7o7z:AG, 7o80:AG, 7o81:AG, 5oa3:d, 6ole:Sd, 6olf:Sd, 6olg:Bd, 6oli:Sd, 6olz:Bd, 6om0:Sd, 6om7:Sd, 7oya:d2, 7oyb:d2, 7oyc:d2, 7oyd:Dd, 8oz0:o, 8p03:e, 8p09:e, 8p2k:AG, 6p4g:e, 6p4h:e, 6p5i:e, 6p5j:e, 6p5k:e, 6p5n:e, 8pj1:i, 8pj2:i, 8pj3:i, 8pj4:i, 8pj5:i, 8pj6:i, 8ppk:d, 8ppl:Ad, 8q7z:AG, 8q87:AG, 7qgg:Sd, 8qoi:Sd, 7qp6:i, 7qp7:i, 7qvp:Sd, 7qvp:Rd, 6qzp:Sd, 7r4x:d, 6r5q:9, 6r6g:9, 6r6p:w, 6r7q:9, 8scb:dd, 6sgc:e1, 7syg:e, 7syh:e, 7syi:e, 7syj:e, 7syk:e, 7syl:e, 7sym:e, 7syn:e, 7syo:e, 7syp:e, 7syq:e, 7syr:e, 7sys:e, 7syt:e, 7syu:e, 7syv:e, 7syw:e, 7syx:e, 5t2c:AG, 8t4s:d, 7toq:AS29, 7tor:AS29, 7tql:f, 7ucj:Dd, 7uck:Dd, 4ug0:Sd, 4ujc:Cd, 4ujd:Cd, 4uje:Bd, 4v5z:An, 4v6x:Ad, 5vyc:d1, 5vyc:d2, 5vyc:d3, 5vyc:d4, 5vyc:d5, 5vyc:d6, 6w2s:e, 6w2t:e, 6xa1:Sd, 7xnx:Sd, 7xny:Sd, 8xsx:Sd, 8xsy:Sd, 8xsz:Sd, 8xxl:Sd, 8xxm:Sd, 8xxn:Sd, 6y0g:Sd, 8y0w:Sd, 8y0x:Sd, 6y2l:Sd, 6y57:Sd, 6yal:e, 6yam:e, 6yan:e, 6ybs:i, 8yoo:Sd, 8yop:Sd, 6z6l:Sd, 6z6m:Sd, 6z6n:Sd, 7zjw:SH, 7zjx:SH, 6zlw:f, 6zm7:Sd, 6zme:Sd, 6zmi:Sd, 6zmo:Sd, 6zmt:f, 6zmw:i, 6zn5:f, 6zoj:d, 6zol:d, 6zon:l, 6zp4:l, 6zuo:d, 6zv6:d, 6zvh:d, 6zvj:l, 6zvk:H3, 6zxd:d, 6zxe:d, 6zxf:d, 6zxg:d, 6zxh:d
27 5xxu:d 51 30 0.1746 0.2157 0.3667 3.1
28 3j7a:T 48 31 0.1587 0.2083 0.3226 5.6 3jbn:T, 3jbo:T, 3jbp:T, 6okk:T, 8tpu:ST
29 8k1l:A 979 28 0.1746 0.0112 0.3929 5.9
30 1ajy:A 71 38 0.2381 0.2113 0.3947 8.1 1ajy:B, 1zme:C, 1zme:D
31 6kyf:A 137 22 0.1746 0.0803 0.5000 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218