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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PKNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDLKVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYL
RATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQV
QHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFI
DPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVYWPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKL
LYPVK

The query sequence (length=325) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4fmm:B 325 325 1.0000 1.0000 1.0000 0.0 4j7q:A, 4j7q:B
2 3b7n:A 307 232 0.1877 0.1987 0.2629 5.24e-12 3b7z:A, 6sld:A
3 6f0e:A 300 219 0.1631 0.1767 0.2420 3.08e-11 7zg9:A, 7zg9:B, 7zga:A, 7zgb:A, 7zgc:A, 7zgd:A
4 7wvt:A 364 182 0.1415 0.1264 0.2527 3.39e-09 7wwd:A, 7wwg:A
5 6w32:B 288 94 0.0769 0.0868 0.2660 0.004 6w32:A, 6w32:C
6 4tlg:A 396 80 0.0615 0.0505 0.2500 0.043 4tlg:B
7 4ciz:A 284 205 0.1169 0.1338 0.1854 0.057 4cj6:A, 3hx3:A, 3hy5:A
8 1olm:E 397 80 0.0646 0.0529 0.2625 0.076 1olm:A, 1olm:C, 4omj:A, 4omj:B, 4omk:A, 4omk:B
9 6z1p:BX 133 56 0.0523 0.1278 0.3036 2.7
10 7vud:A 535 133 0.1077 0.0654 0.2632 4.4
11 7aih:H 162 40 0.0400 0.0802 0.3250 4.5 7ane:H
12 3gyg:A 285 34 0.0400 0.0456 0.3824 6.8 3gyg:C
13 7kz7:A 424 42 0.0462 0.0354 0.3571 8.1 6f47:A, 6g8u:A, 6g8v:A
14 8ajp:A 199 45 0.0523 0.0854 0.3778 8.3
15 7wfx:A 493 160 0.1200 0.0791 0.2437 9.0 7wfx:B, 7wg1:A, 7wg1:B, 7wg2:A, 7wg4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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