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BioLiP
>protein
PKKNSHQYELLKHAEATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWA
DGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAH
LNTSFKHFIFFVQEFNLIDRRELAPLQELIEKL

The query sequence (length=193) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5brk:A 194 193 0.9585 0.9536 0.9585 7.20e-137 5b5v:A, 5b5v:C, 5b5v:B, 5b5v:D, 5b5w:A, 5b6b:A, 5b6b:B, 5b6b:D, 5b6b:F, 5b6b:H, 5b6b:K, 5b6b:M, 5b6b:O, 5brm:A, 5brm:B, 5brm:C, 5brm:D, 5brm:E, 5brm:F, 4j1v:A, 4j1v:C, 4jiz:A, 6mcp:B, 6mcp:D, 6mcq:B, 6mcq:D, 1pi1:A, 5twf:A, 5twf:B, 5twg:A, 5twh:A, 5xqz:A, 5xqz:B
2 2hjn:A 206 193 0.5285 0.4951 0.5285 5.59e-65 5ncn:A
3 5ncm:A 183 180 0.3886 0.4098 0.4167 3.82e-51
4 7k36:H 177 100 0.1347 0.1469 0.2600 3.48e-04
5 5yf4:A 129 146 0.1554 0.2326 0.2055 0.74
6 4zme:A 262 44 0.0881 0.0649 0.3864 1.1 5dyj:A, 5dyj:B, 5e4h:A, 5e4h:B, 5e4h:C, 5e4h:D, 5e4h:E, 5e4h:F, 5e4h:G, 5e4h:H, 5e9e:A, 5e9e:B, 3lkm:A, 3lla:A, 3lla:B, 3lmh:A, 3lmh:B, 3lmi:A, 3lmi:B, 3lmi:C, 3lmi:D, 3pdt:A, 4zme:B, 4zmf:A, 4zmf:B, 4zs4:A, 4zs4:B
7 5mth:H 221 97 0.1088 0.0950 0.2165 1.2 5mo3:H, 5mp1:H, 5mp1:C, 5mp1:F, 5mp1:J, 5mp3:A, 5mp3:H, 5mp5:E, 5mp5:H, 5mp5:A, 5mth:A, 2y6s:D, 2y6s:H
8 5ec0:A 379 98 0.1295 0.0660 0.2551 1.8
9 3eo3:A 288 105 0.1244 0.0833 0.2286 3.2 3eo3:B, 3eo3:C
10 1j1z:A 386 31 0.0622 0.0311 0.3871 3.9 1j1z:B, 1j1z:C, 1j1z:D, 1j20:A, 1j20:B, 1j20:C, 1j20:D, 1j21:A, 1j21:B, 1j21:C, 1j21:D, 1kh2:A, 1kh2:B, 1kh2:C, 1kh2:D, 1kh3:A, 1kh3:B, 1kh3:C, 1kh3:D, 1kor:A, 1kor:B, 1kor:C, 1kor:D
11 2yhw:A 309 58 0.0829 0.0518 0.2759 5.0 2yhy:A, 2yi1:A
12 6eri:AD 221 46 0.0674 0.0588 0.2826 7.3 5h1s:F, 5mlc:E, 5mmi:D, 5mmm:D, 5x8p:D, 5x8t:D
13 1rv3:B 466 60 0.0725 0.0300 0.2333 8.4 1cj0:A, 1ls3:A, 1ls3:B, 1ls3:C, 1ls3:D, 1rv3:A, 1rv4:A, 1rv4:B, 1rvu:A, 1rvu:B, 1rvy:A, 1rvy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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