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BioLiP
>protein
PKHIIQMTGFKMEEKEALVKLLLKLDCTFIKSEKYKNCTHLIAERLCKSEKFLAACAAGKWILTKDYIIHSAKSGRWLDE
TTYEWGYKIEKDSRYSPQMQSAPKRWREELKRTGAPGAFHRWKVVLLVRTDKRSDSLIRVLEAGKANVILPKSSPSGITH
VIASNARIKAEKEKDNFKAPFYPIQYLGDFLLEKLE

The query sequence (length=196) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ir2:B 198 196 1.0000 0.9899 1.0000 2.76e-146 8ir2:A, 8ir4:A, 8ir4:B
2 3al3:A 218 205 0.2959 0.2661 0.2829 9.36e-19 7cmz:A
3 3l41:A 214 126 0.2041 0.1869 0.3175 2.77e-06
4 3szm:C 191 84 0.1020 0.1047 0.2381 1.11e-05 3shv:A, 3shv:B, 3szm:A, 3szm:B, 3szm:D, 3szm:E, 3szm:F, 3szm:G, 3szm:H, 3t1n:A, 3t1n:B, 3u3z:A
5 3sqd:A 211 79 0.1173 0.1090 0.2911 3.84e-04 3sqd:B
6 3k05:B 200 70 0.1122 0.1100 0.3143 0.005 2azm:A, 2azm:B, 3k05:A
7 1q2v:A 518 84 0.1224 0.0463 0.2857 0.13 1q2v:B, 1q2v:C, 1q2v:D, 1q3q:A, 1q3q:B, 1q3q:C, 1q3q:D, 1q3r:A, 1q3s:A, 1q3s:B, 1q3s:C, 1q3s:D, 1q3s:E, 1q3s:F, 1q3s:G, 1q3s:H
8 4u4a:A 214 79 0.1071 0.0981 0.2658 0.19 3coj:X, 3coj:A, 3coj:F, 3coj:B, 3coj:C, 3coj:D, 3coj:E, 3coj:G, 4ifi:A, 4igk:A, 4igk:B, 4jlu:A, 3k0h:A, 3k0k:A, 3k15:A, 3k16:A, 4ofb:A, 3pxe:A, 3pxe:B, 3pxe:C, 3pxe:D, 1t15:A, 1t29:A, 1t2v:A, 1t2v:E, 1t2v:B, 1t2v:C, 1t2v:D, 4u4a:B, 4u4a:C, 4y18:A, 4y18:B, 4y18:C, 4y18:D, 4y18:E, 4y18:F, 4y18:G, 4y18:H, 4y2g:A, 1y98:A
9 3j1f:A 505 86 0.1173 0.0455 0.2674 0.66 3j1f:B, 3j1f:C, 3j1f:D, 3j1f:E, 3j1f:F, 3j1f:G, 3j1f:H, 3j1f:I, 3j1f:K, 3j1f:L, 3j1f:M, 3j1f:N, 3j1f:O, 3j1f:P, 3j1f:Q, 3j1f:R, 3j1f:S, 3ko1:A, 3ko1:B, 3ko1:C, 3ko1:D, 3ko1:E, 3ko1:F, 3ko1:G, 3ko1:H, 3ko1:I
10 7p0l:A 195 54 0.0765 0.0769 0.2778 0.69 7p0l:B
11 6rml:B 278 80 0.1071 0.0755 0.2625 5.1
12 5y9x:A 298 41 0.0612 0.0403 0.2927 7.1 5y9i:A, 5y9y:A, 5yka:A, 5yvz:A, 5yw0:A
13 4e8c:A 594 35 0.0663 0.0219 0.3714 9.7 4e8c:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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